Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.3e-147 524.6 326 100.0
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 3.3e-141 505.4 326 89.3
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 7.8e-114 414.5 343 71.7
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.8e-110 403.3 349 66.8
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.3e-97 360.5 373 59.5
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 8.1e-95 351.3 360 61.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 6.8e-86 321.6 342 57.9
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 7.1e-59 231.9 324 44.8
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 3.9e-49 199.5 339 39.2
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 5.7e-48 195.7 321 40.8
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 4.1e-46 189.5 326 41.4
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.2e-45 188.0 330 38.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.0e-44 184.9 371 36.7
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.6e-42 177.6 327 37.9
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.7e-41 172.2 134 64.9
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.1e-40 171.4 134 64.9
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 4.3e-40 169.5 144 61.1
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 7.4e-40 168.7 383 34.2
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 2.8e-39 166.8 144 55.6
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 3.7e-39 166.4 203 46.3
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 3.7e-39 166.4 214 46.7
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 3.7e-39 166.4 297 38.4
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 4.8e-39 166.0 190 48.9
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 6.3e-39 165.6 204 48.5
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 8.2e-39 165.2 145 57.9
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 3.1e-38 163.3 335 36.1
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 4.1e-38 162.9 325 36.0
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.2e-37 161.4 319 38.2
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.5e-37 161.0 332 35.5
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 2.0e-37 160.6 181 49.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.6e-37 160.2 161 55.9
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 3.4e-37 159.8 377 34.2
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.7e-36 157.5 327 35.5
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 5.0e-36 156.0 195 47.2
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.4e-35 154.5 173 48.6
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.5e-35 153.7 189 46.6
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.5e-35 153.7 197 45.7
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.2e-35 153.3 335 34.3
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 4.2e-35 152.9 327 34.6
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.5e-35 152.5 186 46.2
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 5.5e-35 152.5 142 54.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.6e-34 151.0 144 53.5
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 2.1e-34 150.6 147 55.1
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 3.6e-34 149.8 144 52.8
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.7e-34 149.4 153 51.6
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 4.7e-34 149.4 195 46.2
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 6.1e-34 149.1 186 46.8
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 7.9e-34 148.7 165 50.3
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.0e-33 148.3 186 44.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.0e-33 148.3 320 33.4
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.4e-33 147.9 197 43.7
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.8e-33 147.5 192 45.3
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.3e-33 147.1 185 44.3
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.9e-33 146.4 273 37.7
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 5.1e-33 146.0 145 52.4
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 8.8e-33 145.2 144 52.1
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 8.8e-33 145.2 144 51.4
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 8.8e-33 145.2 178 48.3
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-32 144.8 192 42.7
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.1e-32 144.8 146 54.8
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.5e-32 144.4 194 43.8
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.5e-32 144.4 171 48.5
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 2.0e-32 144.1 183 45.4
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.0e-32 144.1 199 44.7
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.0e-32 144.1 199 41.7
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 2.6e-32 143.7 341 33.7
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.3e-32 143.3 192 43.2
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.4e-32 142.9 192 42.7
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 5.7e-32 142.5 180 48.3
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 7.4e-32 142.1 201 39.8
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 7.4e-32 142.1 200 41.0
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 9.7e-32 141.7 192 42.7
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 1.3e-31 141.4 181 44.8
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.3e-31 141.4 144 49.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.3e-31 141.4 144 50.7
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.7e-31 141.0 181 44.8
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.7e-31 141.0 148 50.7
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.2e-31 140.6 156 48.7
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 4.8e-31 139.4 140 50.0
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.8e-31 139.4 365 30.7
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 8.2e-31 138.7 142 50.0
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.1e-30 138.3 178 46.6
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.8e-30 137.5 135 51.9
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.8e-30 137.5 194 44.3
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.8e-30 137.5 151 50.3
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 2.4e-30 137.1 147 47.6
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 3.1e-30 136.7 147 47.6
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 5.3e-30 136.0 144 47.9
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 5.3e-30 136.0 139 49.6
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 9.1e-30 135.2 133 51.9
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.2e-29 134.8 141 49.6
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.5e-29 134.4 147 46.9
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.5e-29 134.4 145 46.9
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.0e-29 134.0 144 50.7
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 3.4e-29 133.3 132 51.5
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 3.4e-29 133.3 191 39.8
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 3.4e-29 133.3 142 47.9
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 5.9e-29 132.5 181 43.6
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 7.7e-29 132.1 172 44.2
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 7.7e-29 132.1 191 42.4
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 7.7e-29 132.1 182 40.7
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.7e-28 131.0 146 48.6
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 5.0e-28 129.4 155 45.2
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.9e-27 127.5 166 42.8
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.6e-26 124.4 207 39.6
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.1e-26 124.0 401 27.2
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 3.6e-26 123.2 125 52.0
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.8e-25 120.9 194 38.1
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.8e-25 120.9 145 42.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 2.3e-25 120.6 160 46.2
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 6.7e-25 119.0 142 46.5
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 9.7e-24 115.2 155 43.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.7e-23 114.4 177 43.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.1e-22 111.7 327 28.7
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.4e-22 110.5 104 53.8
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 3.1e-22 110.2 146 43.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 7.7e-21 105.5 144 40.3
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.8e-20 103.2 148 44.6
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.1e-19 101.7 162 39.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.2e-18 98.2 143 41.3
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.4e-17 94.7 147 40.8
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 7.5e-16 89.0 147 41.5
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 6.3e-15 85.9 96 46.9
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.8e-14 84.3 107 45.8
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 7.7e-13 79.0 99 45.5
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.3e-12 78.2 92 48.9
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.5e-11 73.9 66 53.0
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 4.0e-09 66.6 115 37.4
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 4.0e-09 66.6 104 36.5
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 5.2e-09 66.2 67 49.3
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.8e-07 60.5 43 58.1
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 6.3e-07 59.3 189 28.0
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.4e-06 58.2 152 29.6
Medtr5g078040 Medicago truncatula HOM05D000136 ORTHO05D000080 9.1e-06 55.5 93 34.4


User provided reference genes

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