Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-233 812.8 409 100.0
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 3.6e-233 811.2 409 99.8
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 5.0e-227 790.8 409 97.6
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 4.5e-220 767.7 409 93.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.0e-216 756.5 409 91.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.5e-215 752.7 409 92.4
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.0e-215 752.3 409 93.2
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.4e-157 559.3 414 67.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 4.6e-156 555.1 287 98.6
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.1e-153 546.2 407 67.1
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.6e-151 539.3 345 74.8
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.5e-149 532.7 412 66.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.2e-149 531.9 408 64.7
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 5.5e-149 531.6 379 68.9
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.7e-148 529.3 419 65.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.1e-146 523.9 346 73.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.5e-146 523.5 346 72.8
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 2.5e-146 522.7 413 64.6
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.3e-146 522.3 386 68.1
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.7e-145 518.8 393 66.2
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.8e-144 516.5 398 65.8
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.8e-144 516.5 414 63.3
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 4.0e-144 515.4 346 70.8
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 2.6e-143 512.7 346 71.1
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.6e-143 512.7 410 62.9
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.5e-143 511.9 385 64.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 5.8e-143 511.5 382 65.7
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.8e-143 511.5 383 64.5
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 7.6e-143 511.1 363 69.1
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.0e-142 510.8 385 64.7
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.9e-142 509.2 411 62.5
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.8e-142 508.8 375 66.7
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.8e-142 508.8 353 69.4
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.1e-141 507.3 378 66.7
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.5e-141 506.1 413 63.7
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 2.5e-141 506.1 346 69.9
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 3.2e-141 505.8 416 62.7
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.5e-141 505.0 341 71.3
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.5e-141 505.0 408 62.3
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 5.5e-141 505.0 346 69.9
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 7.1e-141 504.6 356 68.3
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.6e-140 503.4 345 69.6
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.6e-140 503.4 414 63.3
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.7e-140 502.7 416 61.8
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.1e-140 501.5 347 68.6
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 6.1e-140 501.5 345 70.1
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.0e-139 500.7 487 55.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 3.0e-139 499.2 346 68.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.9e-139 498.8 399 62.4
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.5e-138 496.1 346 68.2
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.5e-138 496.1 410 63.4
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 9.7e-138 494.2 346 69.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.6e-137 493.4 342 69.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.2e-137 493.0 336 72.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 2.2e-137 493.0 430 58.6
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 3.7e-137 492.3 340 67.9
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 6.3e-137 491.5 386 63.2
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 8.2e-137 491.1 353 65.2
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.1e-136 490.7 387 63.8
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.4e-136 490.3 342 69.0
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.8e-136 490.0 339 69.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 5.3e-136 488.4 347 68.0
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.0e-134 484.2 319 71.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.0e-134 484.2 341 69.5
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.9e-134 482.6 395 62.0
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.8e-134 482.3 348 66.1
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.2e-133 479.2 364 64.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 9.4e-133 477.6 342 67.5
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 6.1e-132 474.9 410 58.8
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 3.0e-131 472.6 388 60.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 3.0e-131 472.6 341 65.1
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.9e-131 472.2 344 65.1
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.9e-131 472.2 355 64.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 6.7e-131 471.5 353 64.3
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 2.5e-130 469.5 346 65.3
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 3.3e-130 469.2 347 66.6
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 9.7e-130 467.6 347 66.3
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 9.7e-130 467.6 347 66.3
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-129 467.2 344 64.8
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.7e-129 466.8 344 64.8
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.7e-129 466.8 352 63.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.8e-129 466.1 410 55.9
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.8e-129 466.1 387 59.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.8e-129 466.1 387 59.4
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 4.8e-129 465.3 346 64.7
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 4.8e-129 465.3 358 65.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.4e-128 463.0 346 64.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.1e-128 462.2 344 64.0
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 4.5e-127 458.8 314 71.0
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.0e-126 457.6 305 71.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.7e-126 456.8 353 62.3
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.7e-126 456.8 355 61.7
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 5.0e-126 455.3 353 62.3
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.9e-125 453.4 346 63.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.9e-125 453.4 346 63.0
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.4e-123 447.2 345 63.8
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 8.8e-123 444.5 377 62.3
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.0e-122 443.4 371 60.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.4e-122 442.2 360 63.1
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 7.4e-122 441.4 337 64.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-120 437.2 345 63.2
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.1e-120 436.0 279 77.1
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 7.7e-119 431.4 298 71.5
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.2e-118 429.9 621 44.4
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 3.2e-117 426.0 318 65.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.0e-115 419.5 347 63.1
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.3e-113 414.1 328 59.8
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.6e-111 407.1 330 63.0
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.5e-109 398.7 270 70.0
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.6e-108 397.1 269 69.9
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.1e-104 382.5 299 62.2
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 5.7e-98 362.1 337 52.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.1e-96 356.3 345 49.9
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.7e-94 350.5 261 61.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 9.5e-93 344.7 328 51.2
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.6e-92 342.8 347 52.7
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.6e-90 336.7 267 63.3
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.8e-88 330.5 315 50.2
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-86 324.3 317 49.8
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.8e-83 313.9 305 57.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.2e-82 311.2 284 57.0
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.0e-78 298.1 219 60.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.5e-77 291.6 281 53.0
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.4e-74 282.7 255 60.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 4.9e-73 279.3 203 68.0
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 5.1e-70 269.2 173 74.0
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.4e-64 250.4 245 49.8
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.2e-63 248.1 188 63.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.6e-53 211.8 225 52.9
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.7e-47 193.7 331 36.3
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.5e-42 177.9 163 57.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 8.4e-41 172.2 117 63.2
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.8e-36 157.1 329 33.1
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-35 155.2 150 48.7
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 7.1e-32 142.5 92 67.4
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 9.3e-32 142.1 127 58.3
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 9.6e-29 132.1 346 29.8
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 6.2e-28 129.4 97 58.8
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.5e-16 89.7 109 50.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.1e-15 87.8 78 60.3
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 6.1e-15 86.3 86 46.5


User provided reference genes

Program Settings