Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g064450.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 3.5e-114 414.8 194 100.0
Sopen04g026360 Solanum pennellii HOM05D000007 ORTHO05D000039 2.7e-90 335.5 172 90.7
Solyc04g063440.3 Solanum lycopersicum HOM05D000007 ORTHO05D000039 1.4e-89 333.2 172 90.1
Sopen04g026370 Solanum pennellii HOM05D000007 ORTHO05D000039 2.0e-85 319.3 172 86.0
Sopen00g010140 Solanum pennellii HOM05D000007 ORTHO05D000039 1.0e-84 317.0 172 87.2
Solyc04g063415.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 1.9e-83 312.8 172 85.5
Solyc04g064440.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 1.9e-83 312.8 172 85.5
PGSC0003DMG400024834 Solanum tuberosum HOM05D000007 ORTHO05D000039 6.5e-76 287.7 172 78.5
PGSC0003DMG400024836 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.8e-73 279.6 167 77.8
Sopen04g026380 Solanum pennellii HOM05D000007 ORTHO05D000039 3.0e-73 278.9 152 86.8
Sopen04g026320 Solanum pennellii HOM05D000007 ORTHO05D000039 6.3e-71 271.2 168 75.0
PGSC0003DMG400024833 Solanum tuberosum HOM05D000007 ORTHO05D000039 6.8e-65 251.1 157 75.2
CAN.G46.3 Capsicum annuum HOM05D000007 ORTHO05D000039 8.8e-65 250.8 167 68.3
Solyc04g063400.3 Solanum lycopersicum HOM05D000007 ORTHO05D000039 5.7e-64 248.1 151 75.5
Nitab4.5_0000174g0080 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.2e-56 223.8 163 65.6
Nitab4.5_0008120g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.0e-56 223.0 183 59.6
PGSC0003DMG400024829 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.3e-51 205.7 168 60.7
PGSC0003DMG400024825 Solanum tuberosum HOM05D000007 ORTHO05D000039 9.5e-51 204.1 164 59.8
PGSC0003DMG400024835 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.2e-50 203.8 113 80.5
Sopen04g026420 Solanum pennellii HOM05D000007 ORTHO05D000039 6.8e-41 171.4 157 53.5
PGSC0003DMG400037627 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.9e-36 155.6 147 57.8
PGSC0003DMG400039355 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.9e-35 153.3 154 57.1
Solyc04g064460.2 Solanum lycopersicum HOM05D000007 ORTHO05D000039 9.5e-35 151.0 113 62.8
Sopen04g026400 Solanum pennellii HOM05D000007 ORTHO05D000039 3.6e-34 149.1 140 59.3
Peaxi162Scf00033g00214 Petunia axillaris HOM05D000007 ORTHO05D000039 1.4e-33 147.1 155 45.8
Sopen04g026410 Solanum pennellii HOM05D000007 ORTHO05D000039 1.8e-33 146.7 152 52.0
Peaxi162Scf00066g01632 Petunia axillaris HOM05D000007 ORTHO05D000039 3.1e-33 146.0 163 46.0
Nitab4.5_0010416g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000039 6.8e-33 144.8 163 43.6
Nitab4.5_0006722g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.5e-32 143.7 167 41.9
PGSC0003DMG400038531 Solanum tuberosum HOM05D000007 ORTHO05D000039 9.8e-32 141.0 110 62.7
Peaxi162Scf01439g00001 Petunia axillaris HOM05D000007 ORTHO05D000039 1.3e-31 140.6 157 44.6
Nitab4.5_0013238g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.2e-31 139.8 149 45.0
Nitab4.5_0001530g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000039 3.7e-31 139.0 149 45.0
PGSC0003DMG400045617 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.1e-30 137.5 162 42.0
Nitab4.5_0001821g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 5.4e-30 135.2 152 44.7
Peaxi162Scf00033g00001 Petunia axillaris HOM05D000007 ORTHO05D000039 2.1e-29 133.3 173 37.6
PGSC0003DMG400013031 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.0e-28 131.0 154 42.2
Sopen06g019900 Solanum pennellii HOM05D000007 ORTHO05D000039 5.1e-28 128.6 168 39.9
PGSC0003DMG400030753 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.5e-27 126.3 152 40.1
CAN.G46.1 Capsicum annuum HOM05D000007 ORTHO05D000039 3.6e-26 122.5 79 65.8
Sopen06g019890 Solanum pennellii HOM05D000007 ORTHO05D000039 2.3e-25 119.8 143 39.2
Solyc06g059820.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 5.2e-25 118.6 143 39.9
Peaxi162Scf00033g00031 Petunia axillaris HOM05D000007 ORTHO05D000039 1.5e-24 117.1 159 39.0
Nitab4.5_0000174g0110 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.6e-24 114.8 127 48.8
Peaxi162Scf00037g00084 Petunia axillaris HOM05D000007 ORTHO05D000039 7.6e-24 114.8 156 39.7
CAN.G319.8 Capsicum annuum HOM05D000007 ORTHO05D000039 9.2e-22 107.8 140 39.3
Lj7C597G11 Lonicera japonica HOM05D000007 ORTHO05D000039 9.2e-22 107.8 164 33.5
PGSC0003DMG400030752 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.6e-21 107.1 156 35.3
MSTRG.3214 Avicennia marina HOM05D000007 ORTHO05D000039 3.5e-21 105.9 169 37.9
SalBow1G6928 Salvia bowleyana HOM05D000007 ORTHO05D000039 3.5e-21 105.9 148 38.5
Solyc06g059810.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 6.0e-21 105.1 158 36.1
PGSC0003DMG400024831 Solanum tuberosum HOM05D000007 ORTHO05D000039 5.1e-20 102.1 98 57.1
Dinv34983 Davidia involucrata HOM05D000007 ORTHO05D000039 8.6e-20 101.3 149 40.9
Dinv06511 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-19 100.9 151 41.1
Peaxi162Scf00033g00025 Petunia axillaris HOM05D000007 ORTHO05D000039 2.5e-19 99.8 114 37.7
Dinv34988 Davidia involucrata HOM05D000007 ORTHO05D000039 3.3e-19 99.4 148 41.2
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 4.3e-19 99.0 149 40.3
Rhsim12G0135700 Rhododendron simsii HOM05D000298 ORTHO05D000039 8.9e-17 91.3 149 31.5
Lj7P401T34 Lonicera japonica HOM05D000007 ORTHO05D000039 2.0e-16 90.1 155 35.5
Nitab4.5_0006627g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.4e-16 89.0 150 35.3
Lj3C660T6 Lonicera japonica HOM05D000007 ORTHO05D000039 7.6e-16 88.2 165 35.2
Lj5C836T3 Lonicera japonica HOM05D000007 ORTHO05D000039 9.9e-16 87.8 165 35.2
Ah.01g006770 Amaranthus hybridus HOM05D000007 ORTHO05D000039 3.8e-15 85.9 156 34.6
CAN.G475.39 Capsicum annuum HOM05D000007 ORTHO05D000039 5.4e-14 82.0 141 35.5
Cfa000455 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.6e-13 80.5 146 32.2
EL10Ac9g22770 Beta vulgaris HOM05D000007 ORTHO05D000039 2.1e-13 80.1 146 33.6
AUR62031045 Chenopodium quinoa HOM05D000007 ORTHO05D000039 2.1e-13 80.1 151 34.4
Cfa000444 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.7e-13 79.7 167 29.3
AUR62017742 Chenopodium quinoa HOM05D000007 ORTHO05D000039 2.7e-13 79.7 147 35.4
Lj6C102T0 Lonicera japonica HOM05D000007 ORTHO05D000039 2.7e-13 79.7 166 33.1
PGSC0003DMG400046539 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.7e-13 79.7 154 35.1
Cfa000498 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.5e-13 79.3 146 30.1
PGSC0003DMG400005153 Solanum tuberosum HOM05D000007 ORTHO05D000039 4.6e-13 79.0 153 37.3
EL10Ac9g22607 Beta vulgaris HOM05D000007 ORTHO05D000039 7.8e-13 78.2 131 35.9
Sopen00g007910 Solanum pennellii HOM05D000007 ORTHO05D000039 7.8e-13 78.2 36 94.4
Peaxi162Scf00074g00039 Petunia axillaris HOM05D000007 ORTHO05D000039 1.0e-12 77.8 173 34.1
EL10Ac9g22609 Beta vulgaris HOM05D000007 ORTHO05D000039 1.7e-12 77.0 131 35.1
Ciclev10027421m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.7e-12 77.0 139 33.8
Nitab4.5_0020718g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.3e-12 76.6 59 57.6
PGSC0003DMG400046209 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.3e-12 76.6 171 33.3
Lj2C989T3 Lonicera japonica HOM05D000007 ORTHO05D000039 3.0e-12 76.3 168 34.5
AUR62032927 Chenopodium quinoa HOM05D000007 ORTHO05D000039 5.1e-12 75.5 147 34.7
Potri.005G114900 Populus trichocarpa HOM05D000007 ORTHO05D000039 5.1e-12 75.5 139 30.9
Nitab4.5_0000195g0070 Nicotiana tabacum HOM05D000007 ORTHO05D000039 8.7e-12 74.7 137 35.0
PGSC0003DMG400003729 Solanum tuberosum HOM05D000007 ORTHO05D000039 8.7e-12 74.7 165 32.1
TWI53G1032 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 8.7e-12 74.7 146 34.2
Peaxi162Scf00803g00535 Petunia axillaris HOM05D000007 ORTHO05D000039 1.1e-11 74.3 136 36.0
Cfa017236 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.5e-11 73.9 135 31.1
Peaxi162Scf01571g00011 Petunia axillaris HOM05D000007 ORTHO05D000039 1.5e-11 73.9 156 34.0
Cfa000495 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.9e-11 73.6 144 34.7
COL.COLO4_22623 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.9e-11 73.6 143 33.6
Peaxi162Scf01075g00018 Petunia axillaris HOM05D000007 ORTHO05D000039 1.9e-11 73.6 164 32.9
Cfa000501 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.5e-11 73.2 143 32.2
Peaxi162Scf00803g00055 Petunia axillaris HOM05D000007 ORTHO05D000039 2.5e-11 73.2 136 35.3
Peaxi162Scf00362g01132 Petunia axillaris HOM05D000007 ORTHO05D000039 4.3e-11 72.4 138 37.0
Cfa000453 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.6e-11 72.0 154 27.9
Ciclev10027079m.g Citrus clementina HOM05D000007 ORTHO05D000039 5.6e-11 72.0 135 35.6
Lj2A996T28 Lonicera japonica HOM05D000007 ORTHO05D000039 5.6e-11 72.0 85 43.5
Solyc10g009460.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 5.6e-11 72.0 143 33.6
PGSC0003DMG400043299 Solanum tuberosum HOM05D000007 ORTHO05D000039 5.6e-11 72.0 170 32.4
Dinv44149 Davidia involucrata HOM05D000007 ORTHO05D000039 7.3e-11 71.6 159 32.1
Lj1C1097T6 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-11 71.6 154 28.6
Lj2C989T8 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-11 71.6 170 34.1
Sopen10g005230 Solanum pennellii HOM05D000007 ORTHO05D000039 7.3e-11 71.6 140 33.6
Potri.017G012200 Populus trichocarpa HOM05D000007 ORTHO05D000039 1.3e-10 70.9 153 33.3
PGSC0003DMG400043031 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.3e-10 70.9 166 32.5
Cfa000500 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.6e-10 70.5 143 32.2
Lj1A1095T30 Lonicera japonica HOM05D000007 ORTHO05D000039 1.6e-10 70.5 154 28.6
Solyc04g080320.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 1.6e-10 70.5 162 34.0
Thecc.09G278300 Theobroma cacao HOM05D000007 ORTHO05D000039 1.6e-10 70.5 152 31.6
PGSC0003DMG400047125 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.6e-10 69.3 166 33.1
TWI31G0323 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 3.6e-10 69.3 158 33.5
Cpa.g.sc370.6 Carica papaya HOM05D000007 ORTHO05D000039 4.8e-10 68.9 140 31.4
Nitab4.5_0018243g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.8e-10 68.9 150 32.7
Peaxi162Scf00658g00067 Petunia axillaris HOM05D000007 ORTHO05D000039 4.8e-10 68.9 158 31.0
Solyc10g009450.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 4.8e-10 68.9 140 32.9
Dinv11523 Davidia involucrata HOM05D000007 ORTHO05D000039 8.1e-10 68.2 143 34.3
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-09 67.4 147 32.0
Potri.006G170300 Populus trichocarpa HOM05D000007 ORTHO05D000039 1.4e-09 67.4 151 31.8
QL03p020720 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-09 67.4 152 28.9
QL03p021906 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-09 67.4 152 28.9
Ciclev10003888m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.8e-09 67.0 139 33.8
PGSC0003DMG400003781 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.4e-09 66.6 166 31.3
TWI60G1487 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.4e-09 66.6 166 30.1
Nitab4.5_0005483g0060 Nicotiana tabacum HOM05D016135 ORTHO05D016171 3.1e-09 66.2 138 32.6
Duzib150G0476 Durio zibethinus HOM05D000007 ORTHO05D000039 4.0e-09 65.9 158 28.5
Nitab4.5_0007093g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.0e-09 65.9 153 32.0
Ah.01g018150 Amaranthus hybridus HOM05D000007 ORTHO05D000039 5.3e-09 65.5 151 31.8
QL03p020743 Quercus lobata HOM05D000007 ORTHO05D000039 5.3e-09 65.5 152 28.9
QL03p020817 Quercus lobata HOM05D000007 ORTHO05D000039 5.3e-09 65.5 152 28.9
QL03p021893 Quercus lobata HOM05D000007 ORTHO05D000039 5.3e-09 65.5 152 28.9
Lj1C663T4 Lonicera japonica HOM05D000007 ORTHO05D000039 6.9e-09 65.1 160 29.4
Peaxi162Scf00290g00811 Petunia axillaris HOM05D016135 ORTHO05D016171 6.9e-09 65.1 132 33.3
Cfa017234 Carpinus fangiana HOM05D000007 ORTHO05D000039 9.0e-09 64.7 134 29.1
Lj1P660T10 Lonicera japonica HOM05D000007 ORTHO05D000039 9.0e-09 64.7 162 33.3
SGA_v2.0_scaffold135G34779 Striga asiatica HOM05D000007 ORTHO05D000039 9.0e-09 64.7 138 32.6
PGSC0003DMG400019996 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.2e-08 64.3 150 30.7
Nitab4.5_0008218g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.5e-08 63.9 160 31.2
Peaxi162Scf00658g00066 Petunia axillaris HOM05D000007 ORTHO05D000039 2.6e-08 63.2 180 28.9
TWI81G0699 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.5e-08 62.4 160 31.2
Haze_20972 Corylus avellana HOM05D000007 ORTHO05D000039 5.8e-08 62.0 134 28.4
Dinv07686 Davidia involucrata HOM05D000007 ORTHO05D000039 5.8e-08 62.0 148 29.7
PGSC0003DMG400017392 Solanum tuberosum HOM05D000007 ORTHO05D000039 5.8e-08 62.0 139 33.8
Cfa000428 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.6e-08 61.6 128 30.5
Haze_20133 Corylus avellana HOM05D002457 ORTHO05D008732 7.6e-08 61.6 116 28.4
Nitab4.5_0007133g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.6e-08 61.6 135 31.9
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 9.9e-08 61.2 140 32.1
PGSC0003DMG400010976 Solanum tuberosum HOM05D000007 ORTHO05D000039 9.9e-08 61.2 153 32.7
Duzib114G0947 Durio zibethinus HOM05D000007 ORTHO05D000039 2.2e-07 60.1 133 30.1
Gorai.011G136300 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.9e-07 59.7 112 30.4
Duzib264G1214 Durio zibethinus HOM05D000007 ORTHO05D000039 4.9e-07 58.9 145 31.7
Peaxi162Scf00705g00015 Petunia axillaris HOM05D000007 ORTHO05D000039 4.9e-07 58.9 159 26.4
Sopen04g033920 Solanum pennellii HOM05D000044 ORTHO05D004555 4.9e-07 58.9 130 32.3
Duzib114G0469 Durio zibethinus HOM05D000007 ORTHO05D000039 8.4e-07 58.2 85 34.1
Migut.M00309 Erythranthe guttata HOM05D000007 ORTHO05D000039 8.4e-07 58.2 138 29.0
Hma1.2p1_0178F.1_g078420 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 8.4e-07 58.2 166 27.1
Ciclev10033763m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.1e-06 57.8 123 26.0
Thecc.10G168100 Theobroma cacao HOM05D000007 ORTHO05D000039 1.4e-06 57.4 91 34.1
Lsat_1_v5_gn_2_11481 Lactuca sativa HOM05D000007 ORTHO05D000039 1.9e-06 57.0 144 30.6
Peaxi162Scf00700g00033 Petunia axillaris HOM05D000007 ORTHO05D000039 2.4e-06 56.6 146 30.1
FAN25G2290 Fragaria x ananassa HOM05D000007 ORTHO05D035815 3.2e-06 56.2 116 32.8
Medtr7g407070 Medicago truncatula HOM05D000007 ORTHO05D000017 3.2e-06 56.2 126 29.4
PGSC0003DMG400017422 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.2e-06 56.2 115 32.2
Duzib114G0761 Durio zibethinus HOM05D000007 ORTHO05D000039 4.2e-06 55.8 83 34.9
SalBow7G4817 Salvia bowleyana HOM05D000007 ORTHO05D000039 4.2e-06 55.8 147 28.6
Dinv01035 Davidia involucrata HOM05D000007 ORTHO05D000039 5.4e-06 55.5 148 29.1
Migut.M00314 Erythranthe guttata HOM05D000007 ORTHO05D000039 9.3e-06 54.7 138 27.5


User provided reference genes

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