Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 4.4e-49 197.6 97 100.0
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 4.3e-44 181.0 96 92.7
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 3.4e-17 91.7 68 73.5
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 4.9e-16 87.8 87 55.2
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 2.5e-15 85.5 101 47.5
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 9.3e-15 83.6 93 52.7
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 1.6e-14 82.8 94 48.9
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 2.1e-14 82.4 89 48.3
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 2.1e-14 82.4 63 65.1
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 4.6e-14 81.3 94 46.8
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 7.9e-14 80.5 87 55.2
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 1.3e-13 79.7 93 50.5
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.8e-13 79.3 58 67.2
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.8e-13 79.3 58 67.2
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 2.3e-13 79.0 85 51.8
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 2.3e-13 79.0 90 47.8
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 5.1e-13 77.8 53 69.8
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 6.7e-13 77.4 85 51.8
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.1e-12 76.6 63 61.9
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 1.1e-12 76.6 95 46.3
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 1.1e-12 76.6 60 63.3
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 1.1e-12 76.6 59 66.1
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.5e-12 76.3 61 62.3
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.9e-12 75.9 93 53.8
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 1.9e-12 75.9 53 67.9
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.5e-12 75.5 91 50.5
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 3.3e-12 75.1 46 71.7
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 3.3e-12 75.1 94 47.9
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 5.7e-12 74.3 98 44.9
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 5.7e-12 74.3 54 63.0
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 5.7e-12 74.3 85 51.8
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 7.4e-12 73.9 83 49.4
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.3e-11 73.2 91 46.2
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 1.6e-11 72.8 63 60.3
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 2.2e-11 72.4 93 47.3
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 2.2e-11 72.4 40 75.0
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 3.7e-11 71.6 67 56.7
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 4.8e-11 71.2 67 53.7
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 6.3e-11 70.9 72 55.6
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 8.2e-11 70.5 91 46.2
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 1.1e-10 70.1 86 51.2
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.1e-10 70.1 86 51.2
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 1.4e-10 69.7 93 45.2
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.8e-10 69.3 67 58.2
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.8e-10 69.3 67 58.2
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 1.8e-10 69.3 95 45.3
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 2.4e-10 68.9 86 51.2
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.4e-10 68.9 88 52.3
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 2.4e-10 68.9 89 47.2
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 3.1e-10 68.6 42 64.3
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 3.1e-10 68.6 49 73.5
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 5.3e-10 67.8 94 44.7
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 1.2e-09 66.6 54 63.0
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 2.0e-09 65.9 53 58.5
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 4.5e-09 64.7 86 46.5
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 5.9e-09 64.3 84 42.9
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.7e-08 62.8 89 47.2
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 2.2e-08 62.4 90 38.9
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 1.9e-07 59.3 97 40.2
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 4.2e-07 58.2 68 42.6
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 7.2e-07 57.4 36 69.4
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 7.2e-07 57.4 36 69.4
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 1.2e-06 56.6 38 63.2
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 7.9e-06 53.9 76 43.4


User provided reference genes

Program Settings