Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 0.0e+00 1075.5 522 100.0
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 2.9e-304 1047.7 522 97.5
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 6.7e-293 1010.0 522 92.1
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.9e-287 991.9 522 90.8
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 3.8e-248 861.3 525 81.3
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 5.0e-248 860.9 519 77.5
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 5.2e-245 850.9 515 77.3
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 4.4e-244 847.8 515 76.9
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.9e-243 844.3 518 79.7
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.9e-239 832.4 513 76.2
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.5e-239 832.0 513 76.0
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.6e-238 829.3 513 75.8
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.1e-238 828.9 512 76.2
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 9.8e-236 820.1 512 74.8
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 4.1e-234 814.7 518 73.7
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.1e-231 806.6 515 72.6
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.3e-231 805.1 513 73.1
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 2.8e-230 802.0 514 73.7
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 4.7e-230 801.2 513 73.3
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.1e-229 800.0 514 73.0
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.2e-228 796.6 514 71.2
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 3.4e-228 795.0 515 71.7
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.7e-227 792.7 513 72.1
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 2.2e-227 792.3 518 71.6
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 2.2e-227 792.3 514 71.6
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.7e-227 791.6 512 72.9
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 4.1e-226 788.1 530 71.1
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 5.4e-226 787.7 513 70.8
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.3e-224 782.3 513 70.0
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.3e-224 782.3 492 74.2
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 3.9e-224 781.6 513 69.2
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.9e-224 781.6 513 72.5
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 8.6e-224 780.4 514 70.6
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.1e-223 780.0 517 70.8
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.9e-223 779.2 513 69.8
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 3.3e-223 778.5 514 71.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.3e-223 778.1 513 70.0
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 5.6e-223 777.7 514 69.6
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 5.6e-223 777.7 514 70.4
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 7.3e-223 777.3 497 71.8
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 7.3e-223 777.3 513 70.2
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.1e-222 775.8 514 70.6
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.8e-222 775.4 517 69.4
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 3.6e-222 775.0 515 69.5
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 6.2e-222 774.2 512 69.3
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 8.1e-222 773.9 514 71.0
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.1e-221 773.5 513 69.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.4e-221 773.1 514 68.9
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 3.1e-221 771.9 518 69.5
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.0e-220 769.2 518 67.2
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.4e-220 768.5 469 75.1
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 4.4e-220 768.1 514 68.9
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 5.8e-220 767.7 512 68.6
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 9.9e-220 766.9 513 70.0
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.7e-219 766.1 510 70.2
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.9e-219 765.4 535 67.1
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 3.7e-219 765.0 505 69.5
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.9e-219 764.6 513 69.8
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.9e-218 762.7 514 68.1
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 3.2e-218 761.9 518 68.0
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.1e-217 759.2 512 67.0
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 2.7e-217 758.8 512 68.0
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.3e-215 751.9 518 66.6
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.2e-214 750.0 519 67.2
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.1e-213 745.3 513 67.4
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 4.0e-213 745.0 513 67.4
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 5.2e-213 744.6 572 62.6
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 5.2e-213 744.6 513 67.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 5.2e-213 744.6 513 67.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.5e-212 743.0 513 67.1
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.4e-212 741.9 514 67.1
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 4.9e-211 738.0 474 70.9
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 4.9e-211 738.0 560 64.5
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.4e-210 735.7 518 71.0
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.6e-209 733.0 544 64.0
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.5e-209 731.9 537 64.4
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.0e-208 730.3 513 69.2
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.9e-207 726.1 510 68.2
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 4.9e-203 711.4 513 64.7
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 8.4e-203 710.7 517 66.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 3.2e-202 708.8 511 64.8
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 7.1e-202 707.6 519 65.3
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.5e-199 699.9 520 62.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.1e-197 693.7 684 53.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.4e-197 692.6 544 63.1
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 8.4e-195 684.1 428 75.9
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.9e-193 677.6 434 71.7
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 5.1e-192 674.9 517 60.2
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 4.8e-190 668.3 581 58.5
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 5.3e-189 664.8 496 66.9
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 5.8e-188 661.4 397 76.1
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.4e-186 656.8 499 65.3
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.4e-180 635.6 516 60.5
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.8e-179 632.1 576 55.6
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 1.6e-177 626.7 391 71.9
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 5.5e-170 601.7 420 66.0
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.8e-166 588.6 487 59.1
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.5e-162 576.2 366 74.0
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 7.2e-162 574.7 514 54.5
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 6.3e-158 561.6 338 76.3
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 7.0e-157 558.1 532 51.7
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.3e-150 535.0 309 79.9
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 5.3e-149 531.9 505 53.5
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 9.4e-146 521.2 354 70.1
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 7.5e-143 511.5 512 52.5
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 2.9e-139 499.6 286 79.7
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 2.1e-137 493.4 236 100.0
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.3e-136 490.0 513 50.5
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 3.5e-132 476.1 549 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.5e-130 470.7 447 51.0
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.8e-129 466.5 349 65.9
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.5e-127 460.7 342 65.5
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.2e-124 451.1 255 80.8
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 3.1e-112 409.8 286 66.1
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.2e-110 403.7 228 78.9
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.2e-110 403.7 228 78.9
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.5e-108 396.4 228 77.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 2.5e-82 310.5 525 37.9
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 6.9e-80 302.4 169 87.0
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.4e-77 294.7 165 78.8
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 2.1e-73 280.8 530 35.3
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.4e-72 277.3 204 67.6
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.0e-72 276.6 201 68.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 2.9e-70 270.4 549 32.1
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 3.2e-69 266.9 510 35.3
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.0e-67 260.4 240 56.2
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 6.7e-67 259.2 355 45.1
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 5.7e-66 256.1 488 33.8
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.0e-59 235.3 195 57.9
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 5.1e-51 206.5 262 43.1
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 1.8e-40 171.4 157 59.9
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 7.0e-40 169.5 331 34.7
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 5.2e-35 153.3 85 74.1
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.6e-31 141.0 194 43.3
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 7.7e-31 139.4 109 63.3
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 3.8e-30 137.1 105 64.8
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.1e-29 135.6 79 81.0
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 2.3e-27 127.9 99 60.6
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 3.4e-26 124.0 119 48.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.2e-25 121.3 103 65.0
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.7e-23 112.8 85 61.2
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.6e-20 104.0 269 30.9
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.2e-13 80.5 41 75.6
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.7e-12 77.0 96 47.9
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.2e-07 62.4 80 41.2
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 3.5e-07 60.8 51 52.9


User provided reference genes

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