Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.1e-72 276.6 136 100.0
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.4e-69 265.4 136 96.3
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 8.6e-67 256.9 136 94.9
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.4e-63 244.6 136 91.2
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.0e-60 234.2 137 86.9
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 6.4e-54 214.2 137 81.8
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 8.4e-54 213.8 137 81.8
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 7.3e-50 200.7 137 72.3
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 5.3e-48 194.5 128 79.7
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-46 189.9 140 70.0
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.9e-42 176.0 123 72.4
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 2.4e-37 159.1 131 67.2
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.2e-36 156.8 111 73.0
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.1e-36 156.0 113 70.8
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 7.4e-34 147.5 136 54.4
PGSC0003DMG400001889 Solanum tuberosum HOM05D003474 ORTHO05D003971 8.2e-33 144.1 83 89.2
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.9e-30 134.8 140 55.0
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.1e-29 131.0 143 55.2
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 3.5e-28 128.6 140 55.0
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.6e-25 119.8 138 48.6
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.4e-24 116.7 139 46.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 4.1e-24 115.2 129 49.6
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.2e-23 113.6 139 44.6
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.0e-22 110.5 139 40.3
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-22 110.2 139 39.6
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-22 110.2 138 42.0
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 2.2e-22 109.4 140 42.9
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 2.2e-22 109.4 140 42.9
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.9e-22 109.0 152 41.4
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 3.8e-22 108.6 133 41.4
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.0e-22 108.2 152 42.1
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 5.0e-22 108.2 134 43.3
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 5.0e-22 108.2 141 43.3
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 5.0e-22 108.2 141 43.3
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 5.0e-22 108.2 148 39.9
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 5.0e-22 108.2 140 42.1
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 6.5e-22 107.8 141 43.3
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.4e-21 106.7 140 42.9
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.2e-21 105.1 151 41.1
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.5e-21 104.8 152 41.4
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.5e-21 104.8 152 41.4
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 5.5e-21 104.8 140 44.3
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 7.2e-21 104.4 134 43.3
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 1.6e-20 103.2 140 42.9
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 2.1e-20 102.8 135 43.0
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.6e-20 101.7 145 40.0
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.4e-19 100.1 140 42.1
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.4e-19 100.1 141 41.8
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.4e-19 100.1 139 41.7
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 2.3e-19 99.4 140 41.4
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.3e-19 99.4 145 40.0
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 6.7e-19 97.8 141 44.0
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 6.7e-19 97.8 137 41.6
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.5e-18 96.7 145 37.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 4.3e-18 95.1 140 40.7
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 4.3e-18 95.1 137 38.7
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 7.4e-18 94.4 143 42.0
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 7.4e-18 94.4 148 37.8
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.4e-18 94.4 137 41.6
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 7.4e-18 94.4 144 39.6
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.7e-18 94.0 142 41.5
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-17 93.6 138 38.4
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-17 93.6 138 38.4
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-17 93.6 138 38.4
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.2e-17 92.8 98 52.0
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 2.8e-17 92.4 132 40.2
Peaxi162Scf00212g00104 Petunia axillaris HOM05D003474 ORTHO05D003971 3.7e-17 92.0 86 62.8
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 4.8e-17 91.7 136 40.4
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 4.8e-17 91.7 141 40.4
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.3e-17 91.3 144 40.3
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 6.3e-17 91.3 143 42.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.1e-16 90.5 128 41.4
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.4e-16 90.1 123 43.9
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.4e-16 90.1 131 42.0
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.8e-16 89.7 138 37.0
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.4e-16 89.4 148 35.8
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 3.1e-16 89.0 137 38.7
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.1e-16 88.6 140 34.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.1e-16 88.6 140 34.3
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.3e-16 88.2 134 41.0
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 6.9e-16 87.8 138 37.0
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.9e-16 87.8 134 41.0
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 6.9e-16 87.8 144 38.9
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 9.1e-16 87.4 142 37.3
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 9.1e-16 87.4 133 40.6
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.5e-15 86.7 157 33.8
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.5e-15 86.7 157 33.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.0e-15 86.3 148 35.1
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.0e-15 86.3 132 38.6
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 2.6e-15 85.9 163 34.4
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.9e-15 84.7 138 37.7
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 7.7e-15 84.3 137 38.0
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 7.7e-15 84.3 133 39.1
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.0e-14 84.0 136 33.1
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.3e-14 83.6 138 38.4
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.3e-14 83.6 147 36.1
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 3.8e-14 82.0 106 42.5
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 6.5e-14 81.3 132 36.4
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 8.5e-14 80.9 124 36.3
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 2.5e-13 79.3 134 36.6
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 3.2e-13 79.0 124 36.3
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.2e-13 79.0 110 38.2
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 4.2e-13 78.6 136 32.4
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 5.5e-13 78.2 134 37.3
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 7.2e-13 77.8 123 39.0
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.2e-13 77.8 132 36.4
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.2e-13 77.8 132 36.4
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 9.4e-13 77.4 150 34.7
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-12 77.0 133 36.8
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.6e-12 76.6 129 32.6
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 2.1e-12 76.3 137 35.0
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 2.1e-12 76.3 137 35.0
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 2.1e-12 76.3 137 35.0
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.1e-12 76.3 146 32.9
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 2.7e-12 75.9 124 35.5
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.7e-12 75.9 133 37.6
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 3.6e-12 75.5 131 33.6
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 4.7e-12 75.1 134 35.8
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 4.7e-12 75.1 143 33.6
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 6.1e-12 74.7 135 32.6
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 6.1e-12 74.7 141 35.5
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 7.9e-12 74.3 135 29.6
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 1.0e-11 73.9 135 31.1
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-11 73.9 137 34.3
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.4e-11 73.6 136 33.8
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.8e-11 73.2 135 33.3
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.8e-11 73.2 141 34.8
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.8e-11 73.2 133 35.3
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.8e-11 73.2 137 34.3
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 2.3e-11 72.8 136 33.1
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.3e-11 72.8 134 32.1
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 3.0e-11 72.4 136 34.6
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 3.0e-11 72.4 124 33.9
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 3.9e-11 72.0 137 34.3
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 3.9e-11 72.0 137 34.3
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 5.1e-11 71.6 135 31.9
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.1e-11 71.6 108 40.7
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 6.7e-11 71.2 137 32.8
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 8.8e-11 70.9 137 35.0
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 8.8e-11 70.9 133 28.6
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 8.8e-11 70.9 137 32.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.1e-10 70.5 135 32.6
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 1.1e-10 70.5 141 33.3
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.6e-10 69.3 138 31.2
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 2.6e-10 69.3 137 32.8
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.3e-10 68.9 139 33.8
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 3.3e-10 68.9 137 31.4
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 4.4e-10 68.6 136 33.1
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 7.4e-10 67.8 136 31.6
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.4e-10 67.8 138 34.1
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 9.7e-10 67.4 137 33.6
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-09 67.0 137 32.1
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.7e-09 66.6 131 33.6
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.7e-09 66.6 135 34.1
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.8e-09 65.9 135 31.1
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.8e-09 65.9 135 31.1
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 3.7e-09 65.5 135 30.4
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.8e-09 65.1 136 30.1
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 4.8e-09 65.1 139 30.9
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 8.2e-09 64.3 135 29.6
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.2e-09 64.3 131 32.8
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 8.2e-09 64.3 136 31.6
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 8.2e-09 64.3 137 31.4
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.1e-08 63.9 131 32.8
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.1e-08 63.9 131 32.8
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.4e-08 63.5 135 29.6
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.4e-08 63.5 136 33.8
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 2.4e-08 62.8 135 33.3
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 4.1e-08 62.0 99 36.4
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 4.1e-08 62.0 130 30.8
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 4.1e-08 62.0 109 31.2
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.2e-07 60.5 133 27.8
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 3.4e-07 58.9 140 32.1
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 4.5e-07 58.5 138 31.2
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 5.9e-07 58.2 142 31.7
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 7.7e-07 57.8 151 29.1
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 7.7e-07 57.8 138 32.6
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.0e-06 57.4 137 29.9
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-06 57.0 129 31.8
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 2.9e-06 55.8 137 28.5


User provided reference genes

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