Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.2e-203 713.0 360 100.0
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 6.0e-200 700.7 360 98.1
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 2.3e-191 672.2 361 95.3
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 3.2e-153 545.4 364 80.2
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.5e-134 483.4 367 71.4
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.9e-131 471.5 343 72.3
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.3e-130 470.3 340 72.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.5e-62 244.2 348 44.5
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 7.6e-54 215.3 364 39.0
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 7.6e-54 215.3 364 39.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 3.2e-52 209.9 380 38.2
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.3e-49 199.9 374 37.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.3e-48 198.0 387 37.0
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 2.6e-46 190.3 397 35.3
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.4e-44 184.5 383 34.5
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.9e-44 184.1 449 32.5
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 5.5e-44 182.6 413 34.4
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.7e-42 175.6 371 33.4
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 6.9e-39 165.6 401 30.4
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.2e-38 164.9 414 30.7
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 5.9e-38 162.5 382 33.8
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.7e-37 161.0 364 34.6
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.7e-37 161.0 381 33.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.7e-37 161.0 398 34.2
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 8.5e-37 158.7 371 33.2
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.1e-36 158.3 401 32.4
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.9e-36 157.5 366 33.1
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 3.2e-36 156.8 306 36.9
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 7.2e-36 155.6 296 35.5
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 7.2e-36 155.6 409 32.0
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.6e-35 153.3 359 33.4
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 6.1e-35 152.5 359 34.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 7.9e-35 152.1 386 32.4
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.9e-35 152.1 382 34.0
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.8e-34 151.0 358 34.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.8e-34 151.0 358 34.4
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.8e-34 151.0 358 34.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 3.0e-34 150.2 372 32.0
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.0e-34 150.2 360 33.3
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.7e-34 149.1 386 32.6
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.0e-33 147.5 363 36.1
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 3.3e-33 146.7 294 38.1
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 4.3e-33 146.4 175 47.4
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.7e-33 146.0 183 44.3
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.7e-33 146.0 207 42.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.3e-32 144.8 358 32.7
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.8e-32 143.7 181 44.2
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.8e-32 143.7 375 33.1
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.8e-32 142.9 206 41.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 8.2e-32 142.1 370 31.9
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 8.2e-32 142.1 327 32.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 8.2e-32 142.1 357 33.1
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-31 141.7 381 32.8
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.8e-31 141.0 375 31.7
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-30 138.3 376 29.5
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.5e-30 137.9 366 32.2
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 2.0e-30 137.5 180 44.4
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.6e-30 137.1 163 46.6
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.3e-29 134.8 364 32.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.7e-29 134.4 181 42.0
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 2.2e-29 134.0 375 31.7
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 6.5e-29 132.5 368 31.5
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.5e-29 132.1 371 31.3
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.9e-28 131.0 371 31.0
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.9e-28 131.0 371 30.5
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.9e-28 131.0 387 31.0
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.9e-28 131.0 374 30.7
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.2e-28 129.8 369 30.9
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 4.2e-28 129.8 144 49.3
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 5.5e-28 129.4 363 31.7
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.5e-28 129.4 369 30.6
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-27 128.3 119 48.7
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-27 128.3 119 48.7
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-27 128.3 119 48.7
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-27 128.3 119 48.7
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.2e-27 128.3 119 48.7
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.2e-27 128.3 154 42.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.1e-27 127.5 356 29.2
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.7e-27 127.1 367 32.4
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.7e-27 127.1 139 44.6
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.7e-27 127.1 364 31.3
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.1e-27 125.9 197 41.6
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-26 124.8 161 41.6
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.8e-26 124.4 372 28.8
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.0e-26 123.6 200 38.5
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.7e-26 122.5 385 29.6
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 6.7e-26 122.5 171 41.5
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.8e-26 122.1 378 30.2
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.1e-25 121.7 155 38.7
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.5e-25 121.3 348 29.0
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 2.0e-25 120.9 130 45.4
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 7.4e-25 119.0 206 35.0
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.3e-24 118.2 388 30.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.7e-24 117.9 200 37.5
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.7e-24 117.9 143 42.0
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 3.7e-24 116.7 193 37.3
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.8e-24 116.3 261 34.1
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.8e-23 114.4 355 31.8
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 4.1e-23 113.2 216 33.8
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.0e-23 112.5 259 32.4
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 9.1e-23 112.1 198 37.9
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 9.1e-23 112.1 198 37.9
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.2e-22 111.7 358 29.3
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.6e-22 111.3 338 31.7
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-22 110.9 120 42.5
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-22 110.9 129 45.0
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.0e-22 110.9 129 45.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.6e-22 110.5 115 46.1
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 3.5e-22 110.2 333 31.8
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.3e-21 108.2 357 27.5
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.2e-21 107.5 354 29.4
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.9e-21 107.1 351 29.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 5.0e-21 106.3 310 28.4
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.2e-20 103.6 112 42.9
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.5e-20 102.8 357 26.3
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-19 101.7 112 42.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-19 101.7 112 42.0
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 6.1e-19 99.4 117 41.9
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 8.0e-19 99.0 208 31.2
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.1e-17 95.1 151 40.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.1e-15 88.6 183 34.4
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-15 88.6 96 44.8
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.4e-15 88.2 149 36.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.1e-15 86.7 174 35.6
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 9.1e-15 85.5 109 44.0
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 5.9e-14 82.8 183 29.5
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.0e-13 82.0 284 29.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.2e-13 80.9 373 26.0
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 3.6e-11 73.6 97 38.1
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.2e-10 69.7 288 25.0
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 5.2e-10 69.7 169 27.8
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 6.8e-10 69.3 277 28.9
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.2e-09 68.6 256 27.0
SGA_v2.0_scaffold34G13602 Striga asiatica HOM05D005306 ORTHO05D006158 2.6e-09 67.4 415 25.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 4.4e-09 66.6 89 39.3
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 4.4e-09 66.6 169 30.8
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.1e-07 62.0 286 26.6
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 5.4e-07 59.7 112 32.1
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 7.0e-07 59.3 133 32.3
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.2e-06 58.5 103 31.1


User provided reference genes

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