Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 2.6e-72 275.4 148 100.0
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 1.5e-69 266.2 148 95.9
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 8.8e-57 223.8 152 78.3
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 4.5e-45 184.9 157 66.9
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 1.1e-30 137.1 159 56.6
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 2.9e-23 112.5 154 41.6
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 4.6e-21 105.1 152 40.1
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 5.6e-19 98.2 168 38.1
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 9.5e-19 97.4 169 39.6
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 2.8e-18 95.9 157 35.0
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 8.9e-17 90.9 155 43.9
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.5e-16 90.1 155 43.2
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 1.5e-16 90.1 156 37.8
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 2.0e-16 89.7 155 37.4
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 3.4e-16 89.0 160 38.1
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 3.4e-16 89.0 162 38.3
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 5.8e-16 88.2 150 33.3
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 5.8e-16 88.2 155 43.2
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 9.9e-16 87.4 152 42.8
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 2.2e-15 86.3 155 43.2
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 2.2e-15 86.3 152 42.1
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 2.9e-15 85.9 152 37.5
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 3.7e-15 85.5 159 36.5
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 1.9e-14 83.2 159 35.8
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 4.1e-14 82.0 167 39.5
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 4.1e-14 82.0 162 37.0
Oeu028527.1 Olea europaea HOM05D007384 ORTHO05D008511 7.1e-14 81.3 151 37.7
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 9.2e-14 80.9 162 35.8
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.6e-13 80.1 148 44.6
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 2.7e-13 79.3 160 37.5
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 4.6e-13 78.6 154 35.7
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 7.8e-13 77.8 148 43.9
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 1.3e-12 77.0 156 41.0
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 1.3e-12 77.0 169 40.8
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 1.7e-12 76.6 150 39.3
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 8.6e-12 74.3 160 33.8
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 1.9e-11 73.2 154 36.4
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 4.3e-11 72.0 161 36.6
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 4.3e-11 72.0 156 41.7
SalBow6G3892 Salvia bowleyana HOM05D007384 ORTHO05D008511 4.3e-11 72.0 148 32.4
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 5.6e-11 71.6 145 42.1
DCAR_001367 Daucus carota HOM05D007384 ORTHO05D008511 9.5e-11 70.9 147 38.1
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 1.6e-10 70.1 156 40.4
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 1.6e-10 70.1 157 40.8
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 4.7e-10 68.6 165 33.9
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 8.1e-10 67.8 152 40.1
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 8.1e-10 67.8 162 42.0
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 8.1e-10 67.8 162 42.0
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 8.1e-10 67.8 162 32.7
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 8.1e-10 67.8 170 29.4
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 1.4e-09 67.0 173 35.8
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 1.4e-09 67.0 176 36.9
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 2.4e-09 66.2 75 50.7
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 2.4e-09 66.2 163 33.7
SGA_v2.0_scaffold2G01297 Striga asiatica HOM05D007384 ORTHO05D008511 2.4e-09 66.2 146 34.2
unitig_736.g22624 Utricularia gibba HOM05D007384 ORTHO05D008511 2.4e-09 66.2 140 31.4
Sc07g0001520 Simmondsia chinensis HOM05D007384 ORTHO05D008511 3.1e-09 65.9 145 33.8
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 3.1e-09 65.9 170 29.4
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 6.8e-09 64.7 160 33.1
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 6.8e-09 64.7 165 35.2
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 1.2e-08 63.9 154 38.3
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 1.5e-08 63.5 159 39.6
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 2.0e-08 63.2 182 32.4
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 9.9e-08 60.8 176 32.4
ECA238G3631 Erigeron canadensis HOM05D007384 ORTHO05D008511 1.3e-07 60.5 79 43.0
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 1.7e-07 60.1 169 29.6
unitig_899.g14602 Utricularia gibba HOM05D007384 ORTHO05D008511 1.7e-07 60.1 146 32.9
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 2.9e-07 59.3 157 31.2
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 2.9e-07 59.3 135 34.8
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 3.8e-07 58.9 173 31.8
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 3.8e-07 58.9 146 34.2
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 6.4e-07 58.2 159 34.0
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 6.4e-07 58.2 153 39.2
PGR004G1153 Punica granatum HOM05D007384 ORTHO05D008511 8.4e-07 57.8 151 36.4
Migut.L00076 Erythranthe guttata HOM05D007384 ORTHO05D008511 3.2e-06 55.8 155 37.4
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 5.4e-06 55.1 160 33.1
arahy.Tifrunner.gnm1.ann1.AK8RBW Arachis hypogaea HOM05D007384 ORTHO05D008511 7.1e-06 54.7 168 37.5
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 9.2e-06 54.3 164 34.8


User provided reference genes

Program Settings