Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 1.7e-205 719.2 367 100.0
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 4.5e-187 657.9 369 91.3
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 4.2e-185 651.4 367 91.6
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 1.4e-175 619.8 367 84.5
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.0e-154 550.4 370 75.9
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.6e-147 526.6 364 75.8
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 5.2e-143 511.5 364 72.8
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 1.0e-114 417.5 375 58.1
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 8.7e-114 414.5 375 60.0
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 2.1e-107 393.3 373 55.8
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 3.6e-107 392.5 371 56.3
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 6.1e-107 391.7 376 56.1
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 1.6e-104 383.6 375 54.4
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 2.8e-104 382.9 371 54.7
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 1.1e-103 380.9 373 53.9
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.9e-101 372.9 374 52.4
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 8.5e-101 371.3 374 52.4
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 1.1e-100 370.9 374 56.7
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 1.1e-100 370.9 375 54.1
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 1.4e-100 370.5 371 54.4
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 4.2e-100 369.0 369 54.2
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 5.5e-100 368.6 376 51.3
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.2e-99 367.5 370 52.4
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 2.1e-99 366.7 379 53.3
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 3.0e-98 362.8 377 52.3
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 5.1e-98 362.1 375 52.0
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 6.7e-98 361.7 366 53.0
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 7.4e-97 358.2 374 50.8
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 9.7e-97 357.8 374 51.1
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 2.2e-96 356.7 377 51.2
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 2.2e-96 356.7 372 52.4
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 2.8e-96 356.3 374 52.4
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 2.8e-96 356.3 388 51.5
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 3.7e-96 355.9 372 53.0
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 3.7e-96 355.9 377 49.9
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 4.8e-96 355.5 379 49.6
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 1.8e-95 353.6 376 53.5
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 2.4e-95 353.2 374 50.3
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 4.1e-95 352.4 435 48.0
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-94 350.5 371 50.1
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 1.5e-94 350.5 382 49.0
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 4.5e-94 349.0 373 51.5
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 1.0e-93 347.8 371 50.7
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 6.5e-93 345.1 383 49.1
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.1e-92 344.4 383 49.6
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 2.5e-92 343.2 371 50.7
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 2.7e-91 339.7 349 50.4
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 1.4e-90 337.4 376 47.6
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 7.4e-89 331.6 372 48.4
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 9.7e-89 331.3 373 48.0
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 9.7e-89 331.3 373 51.2
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 1.3e-88 330.9 374 47.3
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 2.2e-88 330.1 374 47.3
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 3.1e-87 326.2 369 47.7
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 5.3e-87 325.5 377 48.3
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 5.3e-87 325.5 370 48.9
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 4.5e-86 322.4 386 49.0
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 1.0e-85 321.2 376 48.1
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 1.7e-85 320.5 419 43.9
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 2.9e-85 319.7 393 44.8
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 3.8e-85 319.3 374 46.8
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 5.0e-85 318.9 365 49.0
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 8.5e-85 318.2 389 47.3
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 8.5e-85 318.2 385 48.3
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 1.1e-84 317.8 384 46.1
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.1e-84 317.8 371 46.4
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.5e-84 317.4 375 47.5
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.5e-84 316.6 381 48.0
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 1.2e-83 314.3 365 49.0
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 2.1e-83 313.5 384 44.8
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 2.7e-83 313.2 379 48.0
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 6.7e-82 308.5 381 44.9
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 1.2e-81 307.8 379 44.9
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 2.6e-81 306.6 380 44.7
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 3.3e-81 306.2 371 44.7
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 4.4e-81 305.8 374 49.7
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.4e-81 305.8 364 46.2
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 4.4e-81 305.8 374 49.2
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 3.7e-80 302.8 383 47.8
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 1.1e-79 301.2 377 47.5
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 1.1e-79 301.2 350 48.3
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 1.4e-79 300.8 382 49.7
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 2.4e-79 300.1 372 48.4
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 5.3e-79 298.9 384 44.8
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 2.7e-78 296.6 371 43.4
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 3.5e-78 296.2 316 50.6
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 5.9e-78 295.4 382 49.2
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 1.7e-77 293.9 372 48.7
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 3.2e-76 289.7 375 43.2
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 9.4e-76 288.1 395 41.0
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 2.1e-75 287.0 368 43.5
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 8.0e-75 285.0 379 48.5
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 1.4e-74 284.3 377 49.1
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-73 280.8 362 43.6
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 2.6e-73 280.0 373 48.8
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 5.7e-73 278.9 374 41.2
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 5.7e-73 278.9 302 50.7
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.8e-72 275.8 366 44.0
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 8.3e-72 275.0 373 47.5
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 5.4e-71 272.3 280 53.9
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 1.6e-70 270.8 374 40.4
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 1.6e-70 270.8 367 42.8
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 1.7e-69 267.3 367 44.4
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.6e-67 259.6 343 44.0
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 5.2e-66 255.8 260 55.4
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 8.3e-64 248.4 351 42.5
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 1.4e-63 247.7 414 37.4
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 8.0e-59 231.9 406 36.2
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 4.9e-56 222.6 375 39.2
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 8.3e-56 221.9 276 49.3
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-54 217.6 171 59.6
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 6.6e-53 212.2 203 56.2
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.2e-46 191.4 171 55.0
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 2.0e-46 190.7 370 31.9
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 4.7e-43 179.5 280 45.4
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 3.4e-41 173.3 479 29.6
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.1e-34 151.8 146 50.7
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 7.6e-25 119.0 88 62.5
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 2.4e-23 114.0 442 26.5
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.7e-21 107.8 87 52.9
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 4.3e-20 103.2 87 59.8
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 9.6e-12 75.5 138 31.2
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 9.6e-12 75.5 79 49.4
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 3.7e-11 73.6 398 24.9
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 1.1e-10 72.0 183 31.7
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.5e-09 68.2 350 24.6
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 5.8e-09 66.2 347 25.6
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 2.9e-08 63.9 423 24.3
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 3.8e-08 63.5 334 23.4
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 3.8e-08 63.5 146 33.6
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 6.4e-08 62.8 373 25.5
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 1.4e-07 61.6 352 25.6
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.4e-07 61.6 356 24.2
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.2e-07 60.5 357 23.0
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 5.5e-07 59.7 381 23.9
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 5.5e-07 59.7 373 24.9
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 5.5e-07 59.7 351 24.5
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 1.6e-06 58.2 53 49.1
Oeu028521.1 Olea europaea HOM05D006130 ORTHO05D007491 2.1e-06 57.8 31 80.6
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 2.1e-06 57.8 356 23.3
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 2.1e-06 57.8 343 23.3
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 4.6e-06 56.6 340 24.1
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 7.9e-06 55.8 115 33.9


User provided reference genes

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