Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 5268.4 2664 100.0
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 5216.0 2664 99.0
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 3830.4 2562 79.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3471.4 2703 66.8
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3349.3 2708 65.8
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3348.1 2682 65.5
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3338.9 2735 64.2
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3226.8 2691 63.8
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3209.5 2701 62.8
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3204.5 2711 62.7
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3184.8 2715 62.3
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3180.6 2705 63.4
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3173.3 2719 62.0
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3164.0 2713 62.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3159.4 2697 62.3
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3143.6 2709 62.2
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3140.5 2698 62.8
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3131.7 2795 60.9
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3124.3 2700 61.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3118.9 2697 61.7
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3118.9 2700 61.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3115.5 2711 61.7
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3113.9 2700 61.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3112.0 2728 60.9
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3107.4 2700 61.1
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3105.1 2704 61.7
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3104.3 2722 61.4
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3102.0 2711 61.7
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3102.0 2696 61.6
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3098.1 2702 61.0
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3089.7 2702 61.0
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3082.0 2708 60.8
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3075.8 2748 60.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3040.0 2708 60.3
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3035.4 2691 60.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3028.8 2677 60.2
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3009.2 2714 59.8
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3006.9 2729 59.1
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3005.3 2707 58.7
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3004.9 2714 59.6
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2998.8 2731 59.3
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2996.1 2655 60.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2994.9 2707 59.7
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2988.7 2731 59.2
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2987.6 2727 58.9
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2978.3 2714 58.4
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2961.4 2715 58.2
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2961.4 2722 58.4
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2956.4 2710 58.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2911.3 2434 63.0
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2900.9 2709 58.0
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2897.8 2649 58.6
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2894.8 2715 57.2
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2873.2 2703 57.6
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2870.5 2483 62.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2867.0 2719 57.3
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2866.3 2640 59.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2863.6 2712 58.4
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2850.1 2717 56.9
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2845.8 2707 57.0
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2845.8 2707 57.1
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2830.4 2697 56.8
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2827.7 2701 56.6
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2827.4 2709 56.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2825.8 2710 56.3
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2820.8 2701 56.5
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2818.9 2703 56.7
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2818.9 2703 56.7
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2817.0 2707 56.7
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2812.3 2638 57.7
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2781.5 2763 55.3
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2771.5 2707 55.2
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2732.2 2708 55.4
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2694.5 2452 59.5
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2655.9 1501 90.9
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2589.7 2461 57.2
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2556.9 1463 89.5
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2551.9 2025 66.3
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2405.2 2667 50.1
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2350.9 2449 52.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2344.7 2691 50.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2310.4 2581 51.2
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2202.9 1593 71.7
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2073.1 1989 57.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2055.4 1694 63.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2003.4 2714 43.7
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1986.1 1154 86.8
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1898.6 1790 59.2
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1835.5 1444 67.5
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1832.0 2744 42.0
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1813.1 2799 40.7
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1810.4 2399 45.0
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1678.3 1861 49.8
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1654.0 2701 38.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1652.9 1860 49.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1453.7 1004 74.2
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1223.8 1560 47.2
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1221.1 1000 65.4
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1218.0 1548 47.1
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1194.9 1252 52.4
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1147.9 839 69.4
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1146.0 976 62.0
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1134.4 705 82.6
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1095.5 835 66.9
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.7e-296 1021.9 975 58.3
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.6e-295 1019.2 851 62.3
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.5e-292 1011.1 1136 52.2
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.8e-280 971.1 3355 27.7
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.9e-248 863.6 440 98.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-234 818.9 903 51.2
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 3.2e-234 817.4 962 47.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.1e-221 773.9 744 55.6
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 4.5e-220 770.4 450 86.7
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.9e-202 711.8 408 87.5
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 3.4e-183 647.9 412 80.1
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 2.8e-169 601.7 934 40.0
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.6e-161 575.9 936 40.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 6.5e-142 510.8 655 44.7
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 2.3e-139 502.3 270 91.9
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.7e-124 452.2 326 69.6
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 6.8e-115 421.0 340 64.4
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 2.9e-110 405.6 443 51.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.6e-108 398.7 250 77.6
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.9e-101 376.3 532 44.7
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 8.0e-100 370.9 302 64.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 4.9e-97 361.7 563 43.7
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 5.8e-90 338.2 327 58.4
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-86 327.0 244 66.0
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 2.2e-81 309.7 217 74.2
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 2.4e-80 306.2 245 62.4
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.5e-79 302.4 307 55.4
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 4.6e-79 302.0 454 39.9
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 2.1e-76 293.1 345 47.8
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 4.3e-69 268.9 341 49.0
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 5.8e-66 258.5 328 46.0
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 3.8e-65 255.8 247 53.8
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.7e-55 223.0 155 71.0
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.9e-55 221.5 117 93.2
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 9.6e-53 214.5 413 34.1
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.5e-48 199.9 377 36.3
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 7.1e-48 198.4 243 43.6
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 9.6e-45 188.0 491 29.9
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.8e-44 186.4 412 32.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-42 180.3 194 49.5
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.6e-42 179.9 93 92.5
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.4e-40 174.1 286 37.4
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.5e-37 164.1 256 39.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-32 147.9 115 67.0
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 2.5e-32 146.7 245 38.4
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.9e-30 139.4 212 39.2
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.0e-26 127.1 117 57.3
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.9e-22 112.8 81 76.5
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 6.7e-22 112.1 146 47.9
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 6.7e-22 112.1 119 46.2
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.0e-21 110.5 150 46.0
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 5.7e-21 109.0 82 68.3
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-19 104.8 110 52.7
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.8e-19 104.0 158 35.4
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.8e-19 104.0 97 56.7
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 7.0e-19 102.1 174 35.1
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 9.1e-19 101.7 70 74.3
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.7e-17 97.4 91 57.1
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.2e-17 97.1 200 29.0
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 7.5e-13 82.0 64 59.4
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 2.7e-10 73.6 59 67.8
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 2.5e-08 67.0 68 58.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 5.5e-08 65.9 44 72.7
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 3.0e-06 60.1 72 45.8


User provided reference genes

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