Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 0.0e+00 1300.8 645 100.0
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 0.0e+00 1294.3 645 99.4
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 9.7e-310 1066.2 631 81.8
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.4e-253 877.5 535 82.6
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.4e-252 876.3 534 82.4
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 9.0e-223 777.3 658 60.0
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.2e-221 772.7 645 60.2
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.4e-220 770.0 643 60.0
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 5.7e-217 758.1 641 59.6
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 2.4e-215 752.7 632 60.0
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 2.0e-214 749.6 634 60.1
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.3e-213 746.9 640 58.9
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 2.5e-212 742.7 644 57.3
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 6.1e-211 738.0 648 58.6
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.1e-211 738.0 648 58.6
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.3e-210 736.1 650 58.5
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.9e-210 735.3 639 58.7
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 6.7e-210 734.6 638 58.0
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 6.7e-210 734.6 635 58.7
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 3.7e-208 728.8 638 57.7
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 3.7e-208 728.8 640 58.1
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 1.1e-207 727.2 631 57.5
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 5.9e-206 721.5 640 56.7
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 5.9e-206 721.5 643 57.1
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 7.7e-206 721.1 624 57.4
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 2.2e-205 719.5 635 57.6
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.2e-204 715.7 637 57.1
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 5.5e-204 714.9 635 58.4
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.8e-202 709.9 625 57.6
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 3.9e-202 708.8 624 56.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.1e-201 707.2 639 55.7
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.5e-201 706.8 642 57.2
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.5e-201 706.8 640 55.3
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 5.7e-201 704.9 633 56.6
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 9.7e-201 704.1 637 56.0
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.7e-200 703.4 647 54.7
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 2.8e-200 702.6 442 76.0
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 8.2e-200 701.0 637 57.0
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.8e-199 699.9 506 67.2
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.8e-199 699.9 633 56.6
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 5.9e-198 694.9 642 55.9
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 3.8e-197 692.2 633 56.2
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 6.5e-197 691.4 631 54.7
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 3.2e-196 689.1 513 65.9
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.2e-195 687.2 637 53.7
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.4e-194 683.7 633 55.6
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 2.3e-194 682.9 642 54.5
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 2.3e-194 682.9 642 55.8
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 2.0e-193 679.9 642 54.8
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.3e-192 677.2 640 55.0
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 8.2e-192 674.5 636 55.0
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.1e-191 672.5 627 54.5
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.3e-189 667.2 628 54.5
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.7e-189 666.8 636 53.9
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.7e-189 666.8 638 53.3
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 2.9e-189 666.0 614 55.7
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.5e-188 662.9 628 54.3
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.5e-188 662.9 508 63.8
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 2.5e-188 662.9 541 60.8
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.2e-188 662.5 508 63.8
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 7.2e-188 661.4 628 53.2
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.0e-186 657.5 644 53.0
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 5.2e-186 655.2 644 53.7
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 8.8e-186 654.4 629 52.5
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 3.3e-185 652.5 623 55.7
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.2e-184 649.8 635 52.9
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 3.7e-184 649.0 634 52.4
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 8.2e-184 647.9 641 53.4
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.1e-183 647.5 634 52.8
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.1e-183 647.5 648 52.2
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.4e-183 647.1 339 92.3
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 3.1e-183 646.0 648 52.2
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 3.1e-183 646.0 509 63.5
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 2.7e-182 642.9 639 52.9
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 3.5e-182 642.5 654 52.3
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 5.9e-182 641.7 446 68.2
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 1.3e-181 640.6 646 51.7
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 3.2e-180 636.0 552 59.1
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.2e-179 634.0 623 51.5
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 2.1e-179 633.3 648 52.5
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.6e-179 632.5 634 51.6
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.5e-177 627.1 704 49.9
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 2.6e-177 626.3 544 59.7
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.1e-175 619.4 678 51.0
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 5.4e-175 618.6 587 53.3
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.7e-166 589.7 391 72.6
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 3.8e-165 585.9 517 58.4
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 8.6e-165 584.7 459 60.3
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 3.3e-164 582.8 391 72.1
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 7.3e-164 581.6 563 54.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 7.5e-161 571.6 404 67.6
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.7e-160 569.3 396 68.7
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.7e-160 569.3 396 68.7
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 3.7e-160 569.3 388 69.8
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 9.5e-156 554.7 639 47.3
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.2e-150 537.7 554 50.5
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 3.5e-150 536.2 388 65.5
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 7.8e-150 535.0 454 59.9
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.1e-146 524.6 588 49.1
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 6.8e-146 521.9 258 98.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.0e-141 508.1 510 52.4
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.0e-141 508.1 536 47.0
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.5e-137 494.2 488 52.5
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.4e-135 487.6 510 51.8
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 2.3e-133 480.3 401 60.6
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.1e-132 478.0 257 95.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 4.4e-129 466.1 454 52.2
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 5.4e-127 459.1 491 50.7
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.6e-123 447.6 489 48.7
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.2e-121 441.4 468 49.6
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 3.5e-118 429.9 452 50.4
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.8e-117 427.6 534 42.9
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.8e-114 417.5 269 74.7
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 9.3e-111 405.2 362 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 4.2e-103 379.8 485 40.0
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-96 357.5 491 42.2
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.9e-95 354.4 345 52.5
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 4.1e-90 336.7 306 54.6
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.5e-89 333.2 276 58.3
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-83 314.3 387 43.4
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.2e-71 273.5 191 65.4
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.5e-71 273.1 481 34.9
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-63 248.4 124 88.7
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.5e-63 247.7 124 89.5
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.8e-61 241.5 159 69.8
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 3.5e-49 200.7 132 68.9
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 2.9e-48 197.6 195 47.7
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 4.6e-41 173.7 245 41.6
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.4e-35 153.3 130 60.8
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.2e-34 151.0 126 57.9
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.0e-33 146.7 217 39.2
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 2.1e-30 138.3 124 56.5
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 7.5e-28 129.8 224 37.1
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 4.9e-19 100.5 127 45.7
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.4e-18 99.0 91 54.9
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.8e-14 84.7 151 35.1
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.1e-10 70.1 68 47.1


User provided reference genes

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