Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g051187.1 Solanum lycopersicum HOM05D006673 ORTHO05D008458 9.9e-32 139.4 67 100.0
Sopen04g022550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-25 119.4 59 98.3
Solyc09g090030.2 Solanum lycopersicum HOM05D006673 ORTHO05D008458 1.6e-18 95.5 73 71.2
Sopen09g032940 Solanum pennellii HOM05D006673 ORTHO05D008458 1.6e-18 95.5 73 71.2
PGSC0003DMG400017176 Solanum tuberosum HOM05D006673 ORTHO05D008458 4.8e-18 94.0 73 69.9
CAN.G793.53 Capsicum annuum HOM05D006673 ORTHO05D008458 6.4e-15 83.6 57 77.2
Nitab4.5_0011884g0020 Nicotiana tabacum HOM05D006673 ORTHO05D000046 2.7e-13 78.2 74 59.5
MSTRG.22700 Avicennia marina HOM05D006673 ORTHO05D008458 2.3e-12 75.1 52 69.2
Cc03_g11070 Coffea canephora HOM05D006673 ORTHO05D008458 7.4e-11 70.1 60 66.7
SGA_v2.0_scaffold37G14814 Striga asiatica HOM05D006673 ORTHO05D008458 9.6e-11 69.7 48 70.8
SalBow2G2533 Salvia bowleyana HOM05D006673 ORTHO05D008458 1.3e-10 69.3 49 69.4
Hma1.2p1_0738F.1_g211070 Hydrangea macrophylla HOM05D006673 ORTHO05D008458 1.8e-09 65.5 56 57.1
Actinidia22101 Actinidia chinensis HOM05D006673 ORTHO05D008458 5.3e-09 63.9 57 61.4
Lsat_1_v5_gn_3_33341 Lactuca sativa HOM05D006673 ORTHO05D008458 5.3e-09 63.9 59 61.0
Dinv29754 Davidia involucrata HOM05D006673 ORTHO05D008458 6.9e-09 63.5 59 61.0
Migut.I00849 Erythranthe guttata HOM05D006673 ORTHO05D008458 9.0e-09 63.2 50 66.0
Nn4g22041 Nelumbo nucifera HOM05D006673 ORTHO05D008458 9.0e-09 63.2 58 63.8
unitig_744.g24339 Utricularia gibba HOM05D006673 ORTHO05D008458 9.0e-09 63.2 51 62.7
CSS0030693 Camellia sinensis var. sinensis HOM05D006673 ORTHO05D008458 2.6e-08 61.6 46 67.4
ECA246G2067 Erigeron canadensis HOM05D006673 ORTHO05D008458 2.6e-08 61.6 47 68.1
HanXRQChr06g0175351 Helianthus annuus HOM05D006673 ORTHO05D008458 3.4e-08 61.2 66 53.0
PGR119G0473 Punica granatum HOM05D006673 ORTHO05D008458 3.4e-08 61.2 55 60.0
MBI07_g11065_MAGBIO Magnolia biondii HOM05D006673 ORTHO05D008458 7.6e-08 60.1 44 70.5
Nitab4.5_0000044g0230 Nicotiana tabacum HOM05D000052 ORTHO05D008458 2.2e-07 58.5 30 83.3
Lj4g0022593 Lotus japonicus HOM05D006673 ORTHO05D008458 3.8e-07 57.8 45 64.4
Glyma.08G091700 Glycine max HOM05D006673 ORTHO05D008458 4.9e-07 57.4 45 66.7
BcaC04g22837 Brassica carinata HOM05D006673 ORTHO05D008458 6.5e-07 57.0 77 50.6
A09p12490 Brassica napus HOM05D006673 ORTHO05D008458 6.5e-07 57.0 77 50.6
Carub.0003s3394 Capsella rubella HOM05D006673 ORTHO05D008458 6.5e-07 57.0 43 72.1
CARHR110080 Cardamine hirsuta HOM05D006673 ORTHO05D008458 6.5e-07 57.0 43 72.1
CARHR237330 Cardamine hirsuta HOM05D006673 ORTHO05D008458 6.5e-07 57.0 43 72.1
Haze_12539 Corylus avellana HOM05D006673 ORTHO05D008458 6.5e-07 57.0 54 61.1
Eucgr.J01690 Eucalyptus grandis HOM05D006673 ORTHO05D008458 6.5e-07 57.0 58 56.9
Eucgr.J01694 Eucalyptus grandis HOM05D006673 ORTHO05D008458 6.5e-07 57.0 58 56.9
MD13G1134900 Malus domestica HOM05D006673 ORTHO05D008458 6.5e-07 57.0 58 55.2
Atru.chr12.1483 Acer truncatum HOM05D006673 ORTHO05D008458 8.4e-07 56.6 42 69.0
Aa31LG8G16640 Aethionema arabicum HOM05D006673 ORTHO05D008458 8.4e-07 56.6 53 60.4
BraA09t36893Z Brassica rapa HOM05D006673 ORTHO05D008458 8.4e-07 56.6 77 50.6
Cpa.g.sc38.24 Carica papaya HOM05D006673 ORTHO05D008458 8.4e-07 56.6 53 62.3
DCAR_030439 Daucus carota HOM05D006673 ORTHO05D008458 8.4e-07 56.6 45 66.7
Thhalv10002010m.g Eutrema salsugineum HOM05D006673 ORTHO05D008458 8.4e-07 56.6 44 68.2
CiPaw.05G097000 Carya illinoinensis HOM05D006673 ORTHO05D008458 1.1e-06 56.2 60 55.0
AL3G48590 Arabidopsis lyrata HOM05D006673 ORTHO05D008458 1.4e-06 55.8 43 69.8
Lalb_Chr13g0293391 Lupinus albus HOM05D006673 ORTHO05D008458 1.4e-06 55.8 45 64.4
C09p14800 Brassica napus HOM05D006673 ORTHO05D008458 3.2e-06 54.7 43 69.8
BolC9t54380H Brassica oleracea HOM05D006673 ORTHO05D008458 3.2e-06 54.7 43 69.8
Manes.10G153800 Manihot esculenta HOM05D006673 ORTHO05D008458 3.2e-06 54.7 55 50.9
Rhsim01G0183300 Rhododendron simsii HOM05D006673 ORTHO05D008458 3.2e-06 54.7 43 65.1
Hund17075 Selenicereus undatus HOM05D006673 ORTHO05D008458 3.2e-06 54.7 57 54.4
Sabra01G0050400 Salix brachista HOM05D006673 ORTHO05D008458 4.2e-06 54.3 55 54.5
TAR371G1163 Trochodendron aralioides HOM05D006673 ORTHO05D008458 4.2e-06 54.3 57 56.1
VMungo0251G3148 Vigna mungo HOM05D006673 ORTHO05D008458 4.2e-06 54.3 45 60.0
Phvul.002G185500 Phaseolus vulgaris HOM05D006673 ORTHO05D008458 5.5e-06 53.9 45 60.0
Potri.001G071700 Populus trichocarpa HOM05D006673 ORTHO05D008458 5.5e-06 53.9 55 54.5
Prupe.1G210500 Prunus persica HOM05D006673 ORTHO05D008458 5.5e-06 53.9 43 62.8
Gohir.D09G235900 Gossypium hirsutum HOM05D006673 ORTHO05D008458 9.3e-06 53.1 54 59.3
Gorai.006G259000 Gossypium raimondii HOM05D006673 ORTHO05D008458 9.3e-06 53.1 54 59.3


User provided reference genes

Program Settings