Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 0.0e+00 2597.8 1341 100.0
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 2484.1 1294 98.8
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 0.0e+00 2382.1 1333 92.1
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 0.0e+00 2238.0 1320 87.2
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1971.4 1260 82.8
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 1936.4 1335 73.8
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1912.5 1343 72.6
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 1877.4 1353 70.2
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1875.9 1231 81.0
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1864.0 1338 70.9
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 1864.0 1343 70.3
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1855.5 1335 70.6
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1843.6 1335 69.7
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 1829.7 1328 69.4
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1826.2 1372 67.4
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1814.3 1334 69.0
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1807.3 1422 65.4
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 1807.0 1328 68.3
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1805.0 1336 67.9
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 1800.8 1341 68.2
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 0.0e+00 1798.5 1370 66.9
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 1790.0 1343 67.5
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1788.9 1334 67.3
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 1783.1 1339 66.8
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 1782.7 1338 67.7
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1780.8 1334 67.3
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 1779.2 1334 67.3
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1777.7 1334 67.3
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 1773.1 1335 66.4
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1763.0 1340 67.0
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 1754.6 1335 66.0
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 1749.6 1335 67.0
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1749.2 1338 66.4
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 1740.7 1340 66.6
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 1737.2 1301 67.1
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1734.5 1337 65.2
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 1730.3 1330 65.2
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1729.5 1350 66.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1726.8 1350 65.9
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 1724.1 1338 65.0
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 1723.4 1337 64.6
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 0.0e+00 1723.4 1330 65.2
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1722.2 1340 66.0
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 1718.0 1297 66.5
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1716.8 1337 64.7
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1714.5 1337 65.0
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1713.4 1337 64.8
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1705.3 1335 64.6
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 1703.3 1337 64.2
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 0.0e+00 1702.2 1339 63.9
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1698.7 1335 64.0
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 0.0e+00 1698.3 1335 64.0
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 1694.1 1334 64.8
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1691.8 1335 63.4
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1691.4 1338 64.2
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 1681.4 1341 63.1
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 0.0e+00 1680.6 1338 64.5
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1679.8 1335 62.9
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 1672.5 1331 64.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1667.1 1335 63.5
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 0.0e+00 1664.4 1354 63.2
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1661.4 1335 65.8
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1661.4 1353 64.4
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 1659.8 1335 63.3
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 0.0e+00 1652.1 1334 62.4
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 0.0e+00 1651.3 1334 62.8
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1649.0 1340 64.2
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1647.5 1340 64.1
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 0.0e+00 1637.1 1334 62.1
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 0.0e+00 1634.0 1334 62.1
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1633.6 1335 61.9
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 0.0e+00 1632.1 1335 61.8
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1630.2 1335 61.7
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 0.0e+00 1628.6 1352 61.9
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1620.9 1338 61.4
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1619.8 1228 66.2
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 1617.4 1335 62.2
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 1617.4 1335 62.2
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1616.7 1335 61.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 0.0e+00 1616.7 1351 60.8
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1611.3 1358 60.5
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 1610.9 1338 61.7
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1598.6 1340 61.7
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1577.4 1301 62.6
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 0.0e+00 1573.5 1334 60.3
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 0.0e+00 1494.9 1338 56.4
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1333.9 1194 56.7
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 0.0e+00 1246.5 1101 57.2
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1237.6 986 64.2
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1140.6 1341 47.1
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 0.0e+00 1135.6 1337 48.1
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1113.6 888 63.7
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 9.4e-299 1030.8 789 65.9
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 8.3e-287 991.1 1335 44.2
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 1.1e-278 964.1 748 64.3
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 3.3e-275 952.6 1359 41.5
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 9.5e-275 951.0 827 60.1
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 4.7e-258 895.6 715 64.2
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 3.5e-253 879.4 644 70.3
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 7.6e-248 861.7 693 62.2
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 6.0e-245 852.0 1319 39.7
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 5.8e-240 835.5 574 76.3
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 4.9e-239 832.4 625 70.6
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 1.4e-230 804.3 643 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 1.3e-223 781.2 1305 37.2
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 5.9e-192 676.0 465 73.1
ATR0787G183 Amborella trichopoda HOM05D003193 ORTHO05D004924 7.4e-187 659.1 678 49.9
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.1e-179 635.2 579 58.5
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 1.4e-172 611.7 515 64.3
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 4.4e-171 606.7 633 48.3
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.6e-160 571.6 345 84.1
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 1.3e-159 568.5 800 42.0
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 4.9e-146 523.5 360 73.9
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 3.1e-132 477.6 305 76.7
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 8.4e-130 469.5 471 55.0
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 2.6e-123 448.0 280 77.5
Actinidia06818 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.2e-121 441.0 448 54.0
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 1.7e-114 418.7 346 63.0
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 2.1e-109 401.7 270 74.8
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 2.3e-103 381.7 220 87.3
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 9.6e-94 349.7 1395 26.7
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 3.8e-82 311.2 366 49.7
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 8.5e-82 310.1 191 83.2
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 7.2e-81 307.0 192 78.6
SHI15643 Sapria himalayana HOM05D003193 ORTHO05D004924 4.5e-75 287.7 306 49.0
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 6.3e-69 267.3 1172 26.4
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 4.1e-68 264.6 294 51.4
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 1.7e-66 259.2 229 60.3
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.7e-61 242.7 160 76.9
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 2.8e-61 241.9 305 53.8
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.8e-61 241.9 221 54.3
MD04G1233900 Malus domestica HOM05D003193 ORTHO05D004924 2.0e-59 235.7 182 65.9
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 2.4e-52 212.2 115 92.2
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 6.5e-50 204.1 119 84.0
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 8.5e-50 203.8 107 94.4
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 7.2e-49 200.7 107 93.5
Os02g0538400 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 5.6e-41 174.5 226 40.7
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 3.6e-40 171.8 306 41.8
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 4.7e-40 171.4 102 78.4
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 6.1e-40 171.0 134 63.4
MD04G1234100 Malus domestica HOM05D003193 ORTHO05D004924 4.4e-38 164.9 113 71.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 3.5e-35 155.2 138 55.1
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 3.5e-35 155.2 138 55.1
MD04G1234200 Malus domestica HOM05D003193 ORTHO05D004924 8.6e-34 150.6 141 54.6
Hund17244 Selenicereus undatus HOM05D003193 ORTHO05D006083 2.2e-29 136.0 109 65.1
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.1e-25 123.6 701 23.5
Zm00001eb208170 Zea mays HOM05D003193 ORTHO05D026302 4.7e-24 118.2 125 60.0
Psat2g117520 Pisum sativum HOM05D003193 ORTHO05D023087 2.9e-21 109.0 70 62.9
SHI15645 Sapria himalayana HOM05D003193 ORTHO05D004924 2.9e-21 109.0 117 49.6
Lsat_1_v5_gn_8_118300 Lactuca sativa HOM05D003193 ORTHO05D002149 8.3e-21 107.5 220 33.6
Actinidia11722 Actinidia chinensis HOM05D003193 ORTHO05D004924 7.8e-19 100.9 74 71.6
MD08G1086100 Malus domestica HOM05D003193 ORTHO05D004924 1.6e-16 93.2 74 55.4
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 2.4e-15 89.4 95 47.4
RcHm_v2.0_Chr5g0043171 Rosa chinensis HOM05D003193 ORTHO05D004924 2.0e-14 86.3 58 67.2
Oeu049759.1 Olea europaea HOM05D000203 ORTHO05D000135 3.2e-12 79.0 86 53.5
Actinidia06819 Actinidia chinensis HOM05D003193 ORTHO05D026302 9.2e-12 77.4 72 58.3
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 9.2e-12 77.4 68 51.5
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 8.6e-10 70.9 248 26.2
SEGI_16883 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.1e-09 70.5 84 41.7
Lsat_1_v5_gn_6_66841 Lactuca sativa HOM05D003193 ORTHO05D228868 4.7e-08 65.1 74 50.0
Actinidia11721 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.4e-07 63.5 62 50.0
Psat4g179720 Pisum sativum HOM05D000104 ORTHO05D006241 9.0e-07 60.8 66 53.0
Lsat_1_v5_gn_0_13081 Lactuca sativa HOM05D000608 ORTHO05D000444 1.2e-06 60.5 69 47.8
Lsat_1_v5_gn_9_73681 Lactuca sativa HOM05D000608 ORTHO05D000444 7.6e-06 57.8 69 46.4
SMO353G0297 Selaginella moellendorffii HOM05D003193 ORTHO05D374493 7.6e-06 57.8 145 31.7
Lsat_1_v5_gn_8_147341 Lactuca sativa HOM05D000608 ORTHO05D000444 9.9e-06 57.4 54 51.9


User provided reference genes

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