Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.4e-76 289.7 153 100.0
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 4.1e-65 251.5 152 88.2
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 2.4e-57 225.7 139 87.1
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.2e-54 214.2 138 79.7
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.2e-54 214.2 138 79.7
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 8.0e-53 210.7 151 72.8
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 7.7e-48 194.1 157 67.5
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.3e-47 193.4 146 69.2
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 2.9e-47 192.2 151 68.9
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 3.4e-27 125.6 148 44.6
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 1.7e-26 123.2 149 47.7
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.2e-26 122.9 157 48.4
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 6.4e-26 121.3 144 47.9
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.9e-25 119.8 156 42.9
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 1.9e-25 119.8 139 43.9
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 4.1e-25 118.6 152 44.7
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 7.0e-25 117.9 148 45.9
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 2.0e-24 116.3 155 41.9
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 6.0e-24 114.8 148 43.9
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 6.0e-24 114.8 141 43.3
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 6.0e-24 114.8 143 42.7
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 1.3e-23 113.6 142 43.7
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.3e-23 113.6 148 42.6
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.3e-23 113.6 147 45.6
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.3e-23 113.6 123 48.0
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 1.7e-23 113.2 148 44.6
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 1.7e-23 113.2 149 46.3
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.7e-23 113.2 148 42.6
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.7e-23 113.2 148 42.6
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 2.3e-23 112.8 134 44.8
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 2.3e-23 112.8 152 41.4
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 5.0e-23 111.7 143 43.4
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 6.6e-23 111.3 142 43.7
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 8.6e-23 110.9 139 46.0
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 1.1e-22 110.5 134 47.0
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 1.1e-22 110.5 152 41.4
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 1.5e-22 110.2 152 41.4
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 1.9e-22 109.8 142 45.8
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.9e-22 109.8 143 44.1
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.5e-22 109.4 150 40.7
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 4.3e-22 108.6 139 41.7
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 5.6e-22 108.2 152 41.4
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 5.6e-22 108.2 149 42.3
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.2e-21 107.1 161 38.5
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.6e-21 106.7 150 39.3
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.1e-21 106.3 154 42.9
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.1e-21 106.3 153 42.5
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 2.8e-21 105.9 150 42.7
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 3.6e-21 105.5 113 45.1
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 4.7e-21 105.1 147 40.8
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 4.7e-21 105.1 144 42.4
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 8.1e-21 104.4 139 41.0
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 8.1e-21 104.4 142 43.7
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.4e-20 103.6 154 41.6
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 1.4e-20 103.6 155 41.9
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 1.4e-20 103.6 139 44.6
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 2.3e-20 102.8 155 41.9
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 3.1e-20 102.4 153 43.1
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 3.1e-20 102.4 152 41.4
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 4.0e-20 102.1 114 49.1
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 8.9e-20 100.9 143 44.1
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 8.9e-20 100.9 139 42.4
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.2e-19 100.5 150 44.0
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 2.6e-19 99.4 136 42.6
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 4.4e-19 98.6 156 38.5
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 5.8e-19 98.2 152 34.9
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 9.8e-19 97.4 125 46.4
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 1.3e-18 97.1 121 39.7
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.7e-18 96.7 123 43.1
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 2.9e-18 95.9 121 43.0
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.4e-17 93.6 154 33.8
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.9e-17 93.2 145 40.0
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 2.4e-17 92.8 152 34.2
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 3.2e-17 92.4 151 41.1
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 5.4e-17 91.7 151 41.1
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 1.6e-16 90.1 127 39.4
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 2.7e-16 89.4 105 43.8
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.0e-15 87.4 152 34.2
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 6.6e-15 84.7 139 36.0
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.5e-14 83.6 140 36.4
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 9.5e-14 80.9 153 32.0
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.6e-13 80.1 142 35.9
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 2.1e-13 79.7 122 41.0
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 2.8e-13 79.3 108 40.7
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.7e-13 78.6 97 42.3
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 1.8e-12 76.6 120 35.8
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 2.3e-12 76.3 129 34.9
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 6.8e-12 74.7 153 28.8
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 6.8e-12 74.7 136 36.0
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.2e-11 73.9 107 35.5
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.2e-11 73.9 107 35.5
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 5.8e-11 71.6 109 40.4
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 7.6e-11 71.2 140 32.9
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 7.6e-11 71.2 109 41.3
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 1.3e-10 70.5 105 38.1
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.9e-10 69.3 59 54.2
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 3.8e-10 68.9 108 38.9
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 4.9e-10 68.6 112 33.9
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.9e-09 66.6 70 41.4
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.2e-08 63.9 68 42.6
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.6e-08 63.5 155 31.6
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 2.1e-08 63.2 62 46.8
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 4.6e-08 62.0 147 29.3
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 6.0e-08 61.6 59 47.5
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 6.0e-08 61.6 59 47.5
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 5.1e-07 58.5 111 32.4
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 6.6e-07 58.2 114 28.9
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 8.6e-07 57.8 58 46.6
Gohir.A11G091300 Gossypium hirsutum HOM05D002440 ORTHO05D002576 4.3e-06 55.5 130 27.7


User provided reference genes

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