Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 5.0e-207 724.2 359 100.0
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 2.0e-200 702.2 365 96.2
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 5.1e-183 644.4 365 88.5
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 4.2e-161 571.6 348 82.5
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 2.3e-159 565.8 361 77.0
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 2.0e-126 456.4 284 82.0
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 8.0e-120 434.5 363 58.7
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.7e-117 426.8 379 58.3
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 2.8e-117 426.0 363 58.7
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 6.3e-117 424.9 364 57.7
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 5.3e-116 421.8 272 78.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.7e-115 419.5 369 57.5
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 3.5e-115 419.1 361 58.4
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 3.0e-111 406.0 337 59.3
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 2.0e-110 403.3 362 57.7
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 1.3e-109 400.6 356 57.9
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 1.7e-109 400.2 364 56.9
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 1.7e-109 400.2 359 56.8
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 1.1e-108 397.5 353 55.5
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.4e-108 396.4 358 55.0
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 4.1e-108 395.6 363 55.4
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 7.0e-108 394.8 357 55.2
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 1.2e-107 394.0 354 55.4
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 2.0e-107 393.3 360 55.0
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.5e-107 392.1 362 55.5
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 4.5e-107 392.1 362 55.5
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 7.7e-107 391.3 357 55.2
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 1.0e-106 391.0 342 57.3
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.3e-106 390.6 371 55.0
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 1.7e-106 390.2 363 53.4
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 2.3e-106 389.8 360 54.2
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 2.3e-106 389.8 360 54.4
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 3.8e-106 389.0 345 55.9
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 1.9e-105 386.7 359 54.3
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 2.5e-105 386.3 359 54.6
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 4.2e-105 385.6 366 51.4
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.5e-105 385.2 354 54.2
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 5.5e-105 385.2 359 54.9
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 1.2e-104 384.0 344 55.2
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 2.8e-104 382.9 356 53.9
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 2.3e-103 379.8 351 55.3
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 3.0e-103 379.4 375 50.9
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 5.2e-103 378.6 362 53.0
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 6.8e-103 378.3 360 52.5
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 6.8e-103 378.3 366 53.3
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 1.5e-102 377.1 362 54.1
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 1.5e-102 377.1 341 55.1
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 3.4e-102 375.9 360 53.9
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 4.4e-102 375.6 362 53.3
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 9.8e-102 374.4 348 54.9
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 1.7e-101 373.6 301 62.1
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 1.8e-100 370.2 354 53.7
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 3.1e-100 369.4 333 56.2
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 7.0e-100 368.2 359 51.5
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 2.0e-99 366.7 367 50.4
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 1.9e-97 360.1 337 54.9
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 5.2e-95 352.1 328 55.2
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 8.9e-95 351.3 360 52.8
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 1.2e-94 350.9 358 49.2
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 4.4e-94 349.0 357 50.1
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 4.9e-93 345.5 358 48.9
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 2.0e-91 340.1 366 51.6
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 4.6e-91 339.0 364 48.9
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 4.6e-91 339.0 363 51.5
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 6.0e-91 338.6 307 55.0
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 2.3e-90 336.7 371 50.9
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 3.0e-90 336.3 357 51.8
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 6.6e-90 335.1 357 51.5
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 1.9e-89 333.6 349 50.7
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 9.5e-89 331.3 356 52.2
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 1.2e-88 330.9 339 52.2
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.2e-88 330.9 343 50.1
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 2.8e-88 329.7 357 51.5
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.8e-87 327.0 315 53.7
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 2.3e-87 326.6 299 55.2
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 4.0e-87 325.9 343 53.1
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 1.2e-86 324.3 357 50.7
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 1.2e-86 324.3 371 49.3
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 2.0e-86 323.6 276 60.1
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.7e-85 320.5 343 51.9
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 1.4e-84 317.4 379 47.0
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 1.1e-81 307.8 329 48.6
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 5.6e-81 305.4 359 48.2
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 3.6e-80 302.8 275 59.3
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 1.3e-74 284.3 252 54.8
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 1.7e-74 283.9 284 54.2
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 3.9e-74 282.7 293 53.2
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 8.6e-74 281.6 272 50.0
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 1.2e-72 277.7 272 55.1
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 2.1e-72 276.9 261 53.3
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 1.9e-68 263.8 339 43.4
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 5.1e-66 255.8 291 49.5
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 1.1e-63 248.1 232 57.3
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 6.9e-63 245.4 272 52.6
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 5.4e-60 235.7 324 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 1.0e-58 231.5 350 38.9
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 5.3e-55 219.2 190 59.5
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 1.4e-52 211.1 368 36.7
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 1.6e-51 207.6 175 58.3
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 3.3e-49 199.9 212 50.9
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 1.6e-48 197.6 269 44.2
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 1.1e-47 194.9 350 36.3
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.7e-45 187.6 321 34.9
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.9e-45 186.8 332 36.7
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 4.3e-41 172.9 224 43.8
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 2.9e-37 160.2 86 88.4
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 3.0e-34 150.2 208 44.7
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 8.7e-34 148.7 159 50.9
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 2.6e-30 137.1 216 42.1
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 4.5e-30 136.3 443 28.9
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 4.6e-27 126.3 93 62.4
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 6.7e-26 122.5 193 39.9
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.4e-20 104.8 222 35.1
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 3.0e-18 97.1 74 54.1
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 2.6e-17 94.0 126 41.3
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 1.3e-16 91.7 325 26.8
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 2.2e-16 90.9 88 47.7
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-14 82.4 69 56.5
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 1.0e-13 82.0 283 28.3
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.8e-13 80.1 203 30.0
CSS0026064 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 5.0e-13 79.7 50 72.0
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 5.0e-13 79.7 65 52.3
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 1.0e-10 72.0 58 62.1
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 3.9e-10 70.1 38 84.2
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 8.8e-10 68.9 176 32.4
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 1.8e-07 61.2 311 26.4
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 1.6e-06 58.2 58 51.7


User provided reference genes

Program Settings