Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-117 424.5 205 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-48 195.7 331 44.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-48 195.7 331 44.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-48 195.7 331 44.4
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-47 193.7 303 46.2
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 7.4e-46 188.0 331 44.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 7.4e-46 188.0 304 45.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.8e-45 186.0 331 42.9
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 4.8e-45 185.3 331 43.2
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.2e-45 184.5 332 43.7
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.4e-44 183.0 331 42.0
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.4e-44 183.0 331 42.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 5.3e-44 181.8 331 42.3
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 5.3e-44 181.8 331 42.3
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-44 181.8 331 41.7
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-44 181.8 331 41.7
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-44 181.8 331 41.7
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-44 181.8 331 41.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.5e-43 180.3 331 42.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.5e-43 180.3 331 42.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.6e-43 179.5 331 40.8
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.6e-43 179.5 331 40.8
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 3.4e-43 179.1 331 41.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 3.4e-43 179.1 331 41.7
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.5e-43 178.7 331 42.3
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.7e-43 177.9 331 40.5
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.0e-42 177.6 331 40.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.3e-42 177.2 331 40.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.3e-42 177.2 331 41.7
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-42 176.4 331 41.1
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.2e-42 176.4 331 41.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 5.0e-42 175.3 331 41.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.0e-42 175.3 332 40.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-41 174.1 309 42.4
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.9e-41 173.3 331 40.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 9.4e-41 171.0 329 40.1
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.7e-40 169.5 330 39.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.8e-39 166.8 334 41.0
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.9e-39 165.6 331 40.5
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.7e-39 164.9 184 56.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.1e-38 164.1 331 39.3
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 7.4e-38 161.4 198 53.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.8e-37 159.5 331 39.0
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 4.1e-36 155.6 275 42.9
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.2e-35 154.1 275 42.2
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.9e-35 151.8 279 43.7
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-33 147.1 212 47.2
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 3.0e-31 139.4 211 45.5
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 5.2e-31 138.7 178 48.9
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 8.8e-31 137.9 331 36.3
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 8.8e-31 137.9 331 36.3
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 8.8e-31 137.9 331 36.3
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 8.8e-31 137.9 331 36.3
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 8.8e-31 137.9 331 36.3
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 8.8e-31 137.9 331 36.3
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.4e-30 135.6 211 44.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-30 135.6 167 50.3
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 7.5e-30 134.8 279 38.7
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-28 129.8 236 41.9
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.4e-28 129.8 183 49.2
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 7.0e-28 128.3 183 48.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.1e-25 120.9 237 38.4
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-25 120.6 162 50.6
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-24 117.1 189 45.0
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-24 117.1 189 45.0
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-24 116.3 155 49.0
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.4e-23 114.0 183 44.3
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.8e-23 113.6 156 47.4
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 3.0e-23 112.8 176 46.0
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 7.5e-22 108.2 238 39.1
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 6.3e-21 105.1 212 38.7
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 8.3e-21 104.8 168 45.2
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 8.3e-21 104.8 168 45.2
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 8.3e-21 104.8 168 45.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 8.3e-21 104.8 168 45.2
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 8.3e-21 104.8 178 42.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 8.3e-21 104.8 168 45.2
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.1e-20 104.4 287 35.2
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.4e-20 103.2 168 44.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.4e-20 103.2 168 44.6
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.4e-20 102.1 235 38.3
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 7.0e-20 101.7 136 47.8
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 7.0e-20 101.7 136 47.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 9.1e-20 101.3 235 38.3
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.0e-19 100.1 256 34.4
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 5.0e-18 95.5 163 41.7
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 6.5e-18 95.1 104 53.8
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 6.5e-18 95.1 104 53.8
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 6.5e-18 95.1 104 53.8
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 8.6e-18 94.7 163 41.1
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.9e-17 93.6 113 50.4
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.9e-17 93.6 104 52.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.5e-17 93.2 104 52.9
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 7.2e-17 91.7 159 44.0
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.2e-16 90.9 163 39.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.8e-16 89.7 207 35.3
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.1e-16 88.6 60 75.0
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.0e-15 87.8 132 47.0
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.8e-15 87.0 157 42.7
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.3e-15 86.7 104 50.0
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 5.2e-15 85.5 189 38.1
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 3.4e-14 82.8 105 47.6
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 7.5e-14 81.6 105 46.7
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 9.8e-14 81.3 95 52.6
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 3.7e-13 79.3 101 47.5
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 4.9e-13 79.0 63 69.8
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 8.3e-13 78.2 182 37.4
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-11 74.3 117 40.2
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.6e-11 73.9 131 40.5
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 4.5e-11 72.4 75 57.3
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.0e-10 71.2 97 47.4
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-10 70.9 102 46.1
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.3e-10 70.9 155 36.8
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.7e-10 70.5 100 47.0
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.7e-10 70.5 97 47.4
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 5.0e-10 68.9 88 47.7
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.9e-09 67.0 93 48.4
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 3.6e-08 62.8 42 78.6
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.8e-07 60.5 41 75.6
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-07 60.1 40 75.0
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.0e-07 59.3 34 82.4
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-07 59.3 64 56.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-07 59.3 34 85.3
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 5.2e-07 58.9 34 85.3
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 6.8e-07 58.5 40 72.5
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 6.8e-07 58.5 40 72.5
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.4e-06 56.2 40 70.0
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 4.4e-06 55.8 34 79.4
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-06 55.8 34 79.4
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 7.5e-06 55.1 40 70.0


User provided reference genes

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