Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.9e-148 528.1 265 100.0
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.9e-147 525.8 265 99.6
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.3e-139 498.4 265 95.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.8e-138 494.6 265 94.3
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 4.5e-136 488.0 265 93.2
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 3.4e-128 461.8 259 88.4
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 4.5e-128 461.5 264 86.7
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.5e-127 457.6 264 85.2
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 8.5e-127 457.2 262 87.8
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 8.5e-127 457.2 262 87.0
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.9e-126 456.1 260 87.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.9e-126 456.1 264 85.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.2e-126 454.9 265 87.2
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.4e-126 453.8 265 87.2
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 9.4e-126 453.8 264 84.5
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 9.4e-126 453.8 264 85.2
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.2e-125 453.4 264 85.2
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.7e-125 452.2 262 85.1
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.0e-124 450.3 259 85.7
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.8e-124 449.5 262 85.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.0e-124 448.7 262 85.9
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.9e-124 448.4 264 85.6
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 5.1e-124 448.0 264 84.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 6.7e-124 447.6 262 85.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 8.8e-124 447.2 264 84.1
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.1e-123 446.8 265 84.9
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.1e-123 446.8 262 85.1
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.6e-123 445.7 264 84.1
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-123 445.3 262 85.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-123 445.3 262 83.2
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 3.3e-123 445.3 264 84.1
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.7e-123 444.5 264 82.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-123 444.5 264 83.7
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 9.7e-123 443.7 264 83.3
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-122 443.0 264 83.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.8e-122 442.2 262 82.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.8e-122 442.2 264 83.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.8e-122 441.4 263 84.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 8.2e-122 440.7 264 84.1
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 8.2e-122 440.7 265 84.5
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-121 440.3 250 88.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.4e-121 439.9 262 83.2
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 3.1e-121 438.7 252 86.1
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 3.1e-121 438.7 260 85.8
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.5e-120 436.4 265 83.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.0e-120 436.0 262 83.2
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.6e-120 435.6 263 83.7
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 3.5e-120 435.3 265 83.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 7.7e-120 434.1 264 82.6
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-119 433.3 252 86.5
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.7e-119 433.0 264 83.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.2e-119 432.6 265 82.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 5.0e-119 431.4 264 81.1
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.4e-118 429.9 264 83.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.2e-118 428.3 262 80.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 7.2e-118 427.6 250 83.6
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-117 426.8 271 80.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.1e-117 426.0 266 78.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.1e-117 426.0 264 81.4
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 3.6e-117 425.2 262 82.8
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 3.6e-117 425.2 260 83.5
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.7e-117 424.9 264 81.1
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 6.1e-117 424.5 264 80.7
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 8.0e-117 424.1 263 82.9
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.8e-116 422.9 260 81.5
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 3.0e-116 422.2 263 81.4
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 5.2e-116 421.4 262 79.4
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 5.2e-116 421.4 272 79.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.2e-116 421.4 264 80.7
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.1e-115 420.2 261 82.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.5e-115 419.9 262 80.2
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.6e-115 419.1 264 81.1
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.6e-115 419.1 264 79.2
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-115 419.1 267 79.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.6e-115 419.1 254 82.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 4.8e-114 414.8 263 80.2
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.4e-113 413.3 251 80.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.1e-113 411.8 264 78.8
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 5.3e-113 411.4 284 75.4
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 9.1e-113 410.6 262 79.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 9.1e-113 410.6 261 81.2
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.6e-112 409.8 259 78.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.6e-112 409.8 264 78.0
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 4.5e-112 408.3 264 79.2
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.5e-112 408.3 264 77.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.9e-112 407.9 257 80.5
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.0e-111 407.1 287 73.5
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.0e-111 407.1 265 77.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.7e-111 406.4 262 78.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.9e-111 405.6 262 78.6
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 2.9e-111 405.6 303 70.6
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.6e-109 399.8 262 77.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.6e-109 398.7 284 74.6
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 4.7e-109 398.3 256 78.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.0e-108 397.1 279 73.1
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.3e-108 396.0 262 77.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.2e-107 393.7 235 82.1
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-107 393.7 266 75.9
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.5e-107 393.3 260 77.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.0e-107 392.9 252 78.6
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.6e-107 392.5 261 76.6
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.7e-106 389.8 262 76.7
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 8.3e-106 387.5 260 75.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.4e-105 386.7 261 75.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 4.5e-104 381.7 317 65.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-103 380.2 250 76.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.6e-101 373.2 257 73.2
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.6e-101 373.2 257 73.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.3e-100 369.4 259 74.5
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.3e-100 369.4 264 72.7
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.8e-100 367.5 263 71.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.5e-99 366.7 272 71.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.5e-99 366.7 266 71.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.0e-99 366.3 260 71.5
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.7e-98 362.1 262 71.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 6.3e-98 361.3 265 70.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.4e-97 359.4 235 77.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 2.4e-97 359.4 257 71.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 7.0e-97 357.8 263 70.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.6e-96 356.7 262 70.2
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.7e-96 355.9 262 69.8
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.5e-96 355.1 262 70.6
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.7e-96 354.4 226 79.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.0e-95 354.0 262 69.1
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.0e-95 354.0 262 69.1
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 5.0e-95 351.7 197 89.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 5.0e-95 351.7 257 70.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 6.6e-95 351.3 262 69.5
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 6.6e-95 351.3 262 69.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-94 348.6 262 68.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 4.2e-94 348.6 262 68.7
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.1e-93 346.3 261 69.7
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.1e-93 346.3 263 69.2
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.1e-93 344.7 262 68.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.4e-92 343.6 262 68.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.0e-92 342.4 252 69.4
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.0e-92 342.4 260 69.2
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 2.0e-91 339.7 281 64.8
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.0e-91 339.7 262 68.7
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.6e-91 339.3 206 83.0
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 6.3e-90 334.7 197 85.8
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.0e-87 327.4 262 65.6
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.0e-84 317.4 262 63.7
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.0e-84 315.5 260 64.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.2e-84 315.1 262 63.4
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 5.8e-83 311.6 260 63.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.2e-81 305.8 260 62.7
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.7e-80 302.8 259 61.4
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 7.3e-78 294.7 241 66.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.4e-75 285.4 189 76.2
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-71 273.1 144 91.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.0e-71 272.7 171 78.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 4.0e-44 182.6 238 49.2
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.1e-40 170.2 282 40.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.0e-39 167.9 244 43.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.5e-38 163.3 148 57.4
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.4e-36 156.8 118 68.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 7.6e-35 151.8 107 71.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.3e-30 136.0 74 93.2
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.8e-29 132.5 93 71.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-26 123.6 261 37.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.2e-25 119.8 76 77.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 2.9e-18 96.7 176 37.5
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.4e-17 94.4 150 36.7
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.3e-15 87.0 85 54.1
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.1e-12 78.2 41 80.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.4e-12 77.0 40 87.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-11 74.7 41 80.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.6e-11 73.6 43 74.4
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 7.7e-11 72.0 124 42.7
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.3e-07 60.5 156 30.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.9e-07 59.7 86 33.7
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-06 57.8 32 90.6


User provided reference genes

Program Settings