Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.4e-92 343.2 204 100.0
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.1e-88 329.3 204 96.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.1e-76 288.9 205 83.4
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.5e-70 269.2 204 82.4
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.6e-64 250.0 205 74.6
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.6e-59 232.6 205 74.6
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.2e-58 229.6 205 70.2
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.3e-53 213.8 201 66.2
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.8e-50 202.2 204 70.1
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.8e-31 140.2 146 54.8
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 4.3e-30 135.6 211 52.1
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 9.7e-30 134.4 142 54.9
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.8e-29 132.9 211 54.0
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 8.2e-29 131.3 210 46.2
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.4e-28 130.6 136 55.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.3e-28 128.6 149 53.7
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 5.3e-28 128.6 142 52.8
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 6.9e-28 128.3 139 55.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 9.1e-28 127.9 137 56.9
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.2e-27 127.5 208 48.1
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.2e-27 127.5 150 56.0
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.5e-27 127.1 143 52.4
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 2.0e-27 126.7 131 58.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 2.0e-27 126.7 209 49.8
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 2.0e-27 126.7 153 54.2
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 4.5e-27 125.6 142 55.6
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.0e-26 124.4 209 46.4
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.7e-26 123.6 149 53.7
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.9e-26 122.9 212 53.3
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 2.9e-26 122.9 149 52.3
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.8e-26 122.5 209 46.4
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 3.8e-26 122.5 134 55.2
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.0e-26 122.1 150 53.3
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 8.5e-26 121.3 207 45.4
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 8.5e-26 121.3 210 46.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.1e-25 120.9 143 51.7
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.9e-25 120.2 208 51.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.5e-25 119.8 147 53.1
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.5e-25 119.8 213 48.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 3.2e-25 119.4 147 51.7
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.2e-25 119.4 143 53.1
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 4.2e-25 119.0 138 52.2
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.2e-25 119.0 137 55.5
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 4.2e-25 119.0 211 50.7
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 4.2e-25 119.0 138 52.9
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 4.2e-25 119.0 146 53.4
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 7.2e-25 118.2 148 51.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 7.2e-25 118.2 150 52.0
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 7.2e-25 118.2 137 54.7
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 9.4e-25 117.9 142 53.5
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 9.4e-25 117.9 149 53.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 9.4e-25 117.9 212 45.8
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 9.4e-25 117.9 138 52.9
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.2e-24 117.5 142 50.0
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.1e-24 116.7 208 51.9
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.1e-24 116.7 135 54.1
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.1e-24 116.7 143 51.7
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.1e-24 116.7 148 50.7
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.6e-24 115.9 143 51.0
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 4.7e-24 115.5 208 41.8
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 6.1e-24 115.2 137 52.6
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 7.9e-24 114.8 139 48.9
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.0e-23 114.4 135 51.1
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.8e-23 113.6 146 49.3
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.8e-23 113.6 138 52.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.3e-23 113.2 146 51.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 3.0e-23 112.8 208 46.2
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.9e-23 112.5 93 64.5
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.2e-23 112.1 141 51.1
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 5.2e-23 112.1 116 55.2
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 6.7e-23 111.7 145 48.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 6.7e-23 111.7 135 49.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 6.7e-23 111.7 135 49.6
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 8.8e-23 111.3 150 48.0
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 8.8e-23 111.3 209 47.4
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.1e-22 110.9 131 51.9
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.1e-22 110.9 140 48.6
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.1e-22 110.9 139 54.0
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.5e-22 110.5 188 48.4
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.6e-22 109.8 137 49.6
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 3.3e-22 109.4 209 45.0
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.3e-22 109.4 132 53.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 4.4e-22 109.0 169 47.3
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 4.4e-22 109.0 143 51.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.7e-22 108.6 141 50.4
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 7.4e-22 108.2 151 50.3
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.3e-21 107.5 202 45.0
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.8e-21 106.3 138 50.0
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.7e-21 105.9 134 50.7
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 4.8e-21 105.5 149 47.7
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.3e-21 105.1 144 47.2
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 6.3e-21 105.1 143 48.3
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 6.3e-21 105.1 123 53.7
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.2e-21 104.8 150 50.7
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 8.2e-21 104.8 82 67.1
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.1e-20 104.4 193 45.6
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.8e-20 103.6 150 49.3
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.8e-20 103.6 136 50.0
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.8e-20 103.6 136 50.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.8e-20 103.6 148 44.6
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.4e-20 103.2 184 38.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.1e-20 102.4 134 51.5
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.6e-19 100.5 135 47.4
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.6e-19 100.5 155 45.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 4.5e-19 99.0 133 51.1
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.9e-19 98.6 148 47.3
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.0e-18 97.8 82 65.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.7e-18 97.1 104 55.8
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.7e-18 97.1 86 65.1
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 3.8e-18 95.9 144 43.8
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-18 95.1 88 62.5
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 6.5e-18 95.1 126 46.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 6.5e-18 95.1 85 60.0
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 8.5e-18 94.7 149 45.0
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-17 94.0 82 62.2
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.5e-17 94.0 82 62.2
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.5e-17 94.0 82 62.2
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.5e-17 94.0 132 47.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.5e-17 93.2 134 44.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.2e-17 92.8 125 51.2
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 4.2e-17 92.4 85 61.2
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.2e-17 92.4 81 61.7
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.2e-17 92.4 81 61.7
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 5.5e-17 92.0 126 46.0
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.2e-17 91.7 102 57.8
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 2.1e-16 90.1 96 55.2
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.7e-16 89.0 126 45.2
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 6.1e-16 88.6 126 45.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 6.1e-16 88.6 126 45.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 6.1e-16 88.6 126 45.2
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 6.1e-16 88.6 160 40.6
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.8e-15 87.0 72 62.5
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 2.3e-15 86.7 75 60.0
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 5.2e-15 85.5 152 44.1
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 5.2e-15 85.5 152 44.1
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 6.7e-15 85.1 161 41.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.5e-14 84.0 61 70.5
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.5e-14 84.0 152 43.4
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.2e-13 80.1 63 65.1
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 2.8e-13 79.7 249 36.5
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-11 74.3 61 62.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.0e-11 73.6 128 43.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-10 71.2 53 67.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 2.2e-10 70.1 75 56.0
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.2e-10 70.1 123 41.5
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.8e-10 69.3 62 59.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 5.0e-10 68.9 62 61.3
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-07 61.2 68 52.9
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 2.3e-07 60.1 100 42.0
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.0e-07 59.7 79 46.8
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 3.0e-07 59.7 142 35.2


User provided reference genes

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