Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049460.2 Solanum lycopersicum HOM05D002401 ORTHO05D007109 2.4e-56 221.9 106 100.0
Nitab4.5_0000140g0030 Nicotiana tabacum HOM05D002401 ORTHO05D007109 2.3e-35 152.1 134 61.2
Sopen02g022370 Solanum pennellii HOM05D002401 ORTHO05D007109 4.0e-35 151.4 134 61.2
PGSC0003DMG400010797 Solanum tuberosum HOM05D002401 ORTHO05D007109 4.0e-35 151.4 134 61.2
PGSC0003DMG400031756 Solanum tuberosum HOM05D002401 ORTHO05D007109 2.6e-34 148.7 134 60.4
Solyc02g077460.3 Solanum lycopersicum HOM05D002401 ORTHO05D007109 3.4e-34 148.3 134 60.4
CAN.G1058.20 Capsicum annuum HOM05D002401 ORTHO05D007109 9.8e-34 146.7 134 58.2
Nitab4.5_0009644g0010 Nicotiana tabacum HOM05D002401 ORTHO05D007109 9.8e-34 146.7 134 59.0
Peaxi162Scf00062g00142 Petunia axillaris HOM05D002401 ORTHO05D007109 1.1e-32 143.3 134 56.7
Actinidia39375 Actinidia chinensis HOM05D002401 ORTHO05D007109 2.7e-31 138.7 134 57.5
CSS0016162 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 2.7e-31 138.7 134 57.5
CSS0040450 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 2.7e-31 138.7 134 57.5
Potri.001G014000 Populus trichocarpa HOM05D002401 ORTHO05D007109 3.5e-31 138.3 134 56.7
Lj1P433T22 Lonicera japonica HOM05D002401 ORTHO05D007109 5.9e-31 137.5 134 56.0
Lj1P433T23 Lonicera japonica HOM05D002401 ORTHO05D007109 5.9e-31 137.5 134 56.0
Lj1P432T20 Lonicera japonica HOM05D002401 ORTHO05D007109 7.8e-31 137.1 134 55.2
vmacro21025 Vaccinium macrocarpon HOM05D002401 ORTHO05D007109 1.0e-30 136.7 134 53.7
TAR636G3466 Trochodendron aralioides HOM05D002401 ORTHO05D007109 1.3e-30 136.3 106 66.0
PSO675G9034 Papaver somniferum HOM05D002401 ORTHO05D007109 2.3e-30 135.6 134 53.7
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 3.0e-30 135.2 134 52.2
CiPaw.13G168200 Carya illinoinensis HOM05D002401 ORTHO05D007109 3.9e-30 134.8 134 56.7
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 3.9e-30 134.8 134 52.2
Prupe.6G017700 Prunus persica HOM05D002401 ORTHO05D007109 5.0e-30 134.4 134 55.2
HanXRQChr02g0056731 Helianthus annuus HOM05D002401 ORTHO05D007109 6.6e-30 134.0 134 53.7
Thecc.09G219400 Theobroma cacao HOM05D002401 ORTHO05D007109 6.6e-30 134.0 134 56.0
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 8.6e-30 133.7 134 53.7
CSS0023444 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.1e-29 133.3 136 56.6
CSS0035740 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.1e-29 133.3 136 56.6
ECA233G1816 Erigeron canadensis HOM05D002401 ORTHO05D007109 1.5e-29 132.9 134 53.7
Ah.04g161710 Amaranthus hybridus HOM05D002401 ORTHO05D007109 1.9e-29 132.5 134 54.5
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.9e-29 132.5 134 53.7
Psat6g214760 Pisum sativum HOM05D002401 ORTHO05D007109 2.5e-29 132.1 134 53.0
QL01p009075 Quercus lobata HOM05D002401 ORTHO05D007109 3.3e-29 131.7 134 55.2
AUR62019226 Chenopodium quinoa HOM05D002401 ORTHO05D007109 4.3e-29 131.3 134 54.5
DCAR_002030 Daucus carota HOM05D000038 ORTHO05D000143 4.3e-29 131.3 134 54.5
Dinv08058 Davidia involucrata HOM05D002401 ORTHO05D007109 5.6e-29 131.0 134 55.2
Eucgr.B02601 Eucalyptus grandis HOM05D002401 ORTHO05D007109 5.6e-29 131.0 134 54.5
Medtr1g106190 Medicago truncatula HOM05D002401 ORTHO05D007109 5.6e-29 131.0 134 53.0
Atru.chr3.2466 Acer truncatum HOM05D002401 ORTHO05D007109 7.3e-29 130.6 134 55.2
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 7.3e-29 130.6 76 82.9
Duzib168G1104 Durio zibethinus HOM05D002401 ORTHO05D007109 7.3e-29 130.6 134 53.7
Migut.N02287 Erythranthe guttata HOM05D002401 ORTHO05D007109 7.3e-29 130.6 78 79.5
MD11G1020800 Malus domestica HOM05D002401 ORTHO05D007109 7.3e-29 130.6 134 54.5
AL1G14330 Arabidopsis lyrata HOM05D002401 ORTHO05D007109 9.5e-29 130.2 134 53.0
AT1G04640 Arabidopsis thaliana HOM05D002401 ORTHO05D007109 9.5e-29 130.2 134 53.0
COL.COLO4_10387 Corchorus olitorius HOM05D002401 ORTHO05D007109 9.5e-29 130.2 134 54.5
Manes.14G015200 Manihot esculenta HOM05D002401 ORTHO05D007109 9.5e-29 130.2 134 55.2
CARHR004000 Cardamine hirsuta HOM05D002401 ORTHO05D007109 1.2e-28 129.8 134 52.2
Nn6g34874 Nelumbo nucifera HOM05D002401 ORTHO05D007109 1.2e-28 129.8 134 54.5
MSTRG.225 Avicennia marina HOM05D002401 ORTHO05D007109 1.6e-28 129.4 134 55.2
Gorai.013G249500 Gossypium raimondii HOM05D002401 ORTHO05D007109 1.6e-28 129.4 134 53.7
RcHm_v2.0_Chr5g0079311 Rosa chinensis HOM05D002401 ORTHO05D007109 1.6e-28 129.4 134 55.2
Sp4g14620 Schrenkiella parvula HOM05D002401 ORTHO05D007109 1.6e-28 129.4 134 53.0
Sc16g0011880 Simmondsia chinensis HOM05D002401 ORTHO05D007109 1.6e-28 129.4 134 53.7
Ciclev10016532m.g Citrus clementina HOM05D002401 ORTHO05D007109 2.1e-28 129.0 78 79.5
Gohir.D13G218700 Gossypium hirsutum HOM05D002401 ORTHO05D007109 2.1e-28 129.0 134 53.0
TAR636G2973 Trochodendron aralioides HOM05D002401 ORTHO05D007109 3.6e-28 128.3 134 53.0
TWI32G0621 Tripterygium wilfordii HOM05D002401 ORTHO05D007109 4.7e-28 127.9 146 50.0
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 6.2e-28 127.5 134 53.0
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 8.0e-28 127.1 134 50.7
Cc01_g03820 Coffea canephora HOM05D002401 ORTHO05D007109 8.0e-28 127.1 76 80.3
Gohir.A13G215000 Gossypium hirsutum HOM05D002401 ORTHO05D007109 8.0e-28 127.1 134 53.0
SalBow2G2702 Salvia bowleyana HOM05D002401 ORTHO05D007109 8.0e-28 127.1 134 53.0
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.0e-27 126.7 134 50.0
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.0e-27 126.7 134 50.7
ClCG03G013630 Citrullus lanatus HOM05D002401 ORTHO05D007109 1.4e-27 126.3 76 77.6
TPR.G21143 Trifolium pratense HOM05D002401 ORTHO05D007109 1.4e-27 126.3 134 49.3
Ca_02939_v3 Cicer arietinum L. HOM05D002401 ORTHO05D007109 1.8e-27 125.9 134 51.5
Glyma.20G134600 Glycine max HOM05D002401 ORTHO05D007109 2.3e-27 125.6 134 51.5
PSO170G3695 Papaver somniferum HOM05D002401 ORTHO05D007109 2.3e-27 125.6 134 50.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.1e-27 125.2 134 50.0
Carub.0001s0388 Capsella rubella HOM05D002401 ORTHO05D007109 3.1e-27 125.2 134 50.7
Thhalv10009297m.g Eutrema salsugineum HOM05D002401 ORTHO05D007109 4.0e-27 124.8 134 51.5
Aa31LG1G20230 Aethionema arabicum HOM05D002401 ORTHO05D007109 5.2e-27 124.4 134 50.7
MELO3C015679.2 Cucumis melo HOM05D002401 ORTHO05D007109 5.2e-27 124.4 134 50.7
Lalb_Chr21g0308061 Lupinus albus HOM05D002401 ORTHO05D007109 5.2e-27 124.4 134 51.5
FvH4_3g43830 Fragaria vesca HOM05D002401 ORTHO05D007109 6.8e-27 124.0 134 52.2
FAN11G0540 Fragaria x ananassa HOM05D002401 ORTHO05D007109 6.8e-27 124.0 134 52.2
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.8e-27 124.0 134 52.2
FAN25G3049 Fragaria x ananassa HOM05D002401 ORTHO05D007109 6.8e-27 124.0 134 52.2
Sp1g03480 Schrenkiella parvula HOM05D002401 ORTHO05D007109 8.9e-27 123.6 134 50.0
BolC8t46940H Brassica oleracea HOM05D002401 ORTHO05D007109 1.2e-26 123.2 78 75.6
arahy.Tifrunner.gnm1.ann1.EBKF2Y Arachis hypogaea HOM05D002401 ORTHO05D007109 1.5e-26 122.9 134 50.0
BcaC07g36894 Brassica carinata HOM05D002401 ORTHO05D007109 1.5e-26 122.9 78 75.6
CsaV3_1G042440 Cucumis sativus L. HOM05D002401 ORTHO05D007109 1.5e-26 122.9 134 50.0
PGR119G1645 Punica granatum HOM05D002401 ORTHO05D007109 1.5e-26 122.9 134 52.2
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.5e-26 122.9 134 50.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.0e-26 122.5 134 51.5
C08p01320 Brassica napus HOM05D002401 ORTHO05D007109 2.6e-26 122.1 78 74.4
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.6e-26 122.1 158 46.2
arahy.Tifrunner.gnm1.ann1.IPP45T Arachis hypogaea HOM05D002401 ORTHO05D007109 4.4e-26 121.3 134 50.0
arahy.Tifrunner.gnm1.ann1.Y60BUA Arachis hypogaea HOM05D002401 ORTHO05D007109 4.4e-26 121.3 134 50.0
Phvul.007G046000 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 4.4e-26 121.3 134 50.0
PGR119G2292 Punica granatum HOM05D002401 ORTHO05D007109 4.4e-26 121.3 134 51.5
CDE09G0839 Ceratophyllum demersum HOM05D002401 ORTHO05D007109 5.8e-26 120.9 134 48.5
AUR62024019 Chenopodium quinoa HOM05D002401 ORTHO05D007109 5.8e-26 120.9 134 52.2
VMungo0720G0059 Vigna mungo HOM05D002401 ORTHO05D007109 5.8e-26 120.9 134 50.0
Lj5g0001405 Lotus japonicus HOM05D002401 ORTHO05D007109 9.8e-26 120.2 134 48.5
PSO017G5010 Papaver somniferum HOM05D002401 ORTHO05D007109 9.8e-26 120.2 134 50.7
Sed0000230 Sechium edule HOM05D002401 ORTHO05D007109 9.8e-26 120.2 76 71.1
C08p01270 Brassica napus HOM05D002401 ORTHO05D007109 1.3e-25 119.8 134 49.3
BcaC07g36899 Brassica carinata HOM05D002401 ORTHO05D007109 1.7e-25 119.4 134 48.5
HPP92_006661 Vanilla planifolia HOM05D002401 ORTHO05D007109 8.3e-25 117.1 78 69.2
ATR0307G126 Amborella trichopoda HOM05D002401 ORTHO05D007109 2.4e-24 115.5 134 47.0
BolC8t46934H Brassica oleracea HOM05D002401 ORTHO05D007109 4.1e-24 114.8 138 47.8
SHI03518 Sapria himalayana HOM05D002401 ORTHO05D007109 5.4e-24 114.4 146 45.2
SEGI_03744 Sequoiadendron giganteum HOM05D002401 ORTHO05D007109 9.2e-24 113.6 78 67.9
MBI19_g15086_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D007109 1.2e-23 113.2 76 72.4
unitig_52.g17159 Utricularia gibba HOM05D002401 ORTHO05D007109 4.6e-23 111.3 83 65.1
Os03g0321800 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D007109 9.5e-21 103.6 78 62.8
Zm00001eb295550 Zea mays HOM05D002401 ORTHO05D007109 2.8e-20 102.1 78 57.7
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 4.7e-20 101.3 76 64.5
Nitab4.5_0004389g0090 Nicotiana tabacum HOM05D002401 ORTHO05D007109 1.8e-19 99.4 100 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1505 Anthoceros agrestis HOM05D002401 ORTHO05D007109 3.1e-19 98.6 91 52.7
Mapoly0010s0076 Marchantia polymorpha HOM05D002401 ORTHO05D007109 1.7e-17 92.8 76 56.6
Glyma.10G256700 Glycine max HOM05D002401 ORTHO05D007109 4.9e-17 91.3 68 66.2
Pp3c27_7140 Physcomitrium patens HOM05D002401 ORTHO05D007109 7.1e-16 87.4 91 47.3
CBR_g18683 Chara braunii HOM05D002401 ORTHO05D007109 7.8e-15 84.0 76 51.3
GSVIVG01025351001 Vitis vinifera HOM05D002401 ORTHO05D007109 3.0e-14 82.0 98 48.0
Oeu007983.1 Olea europaea HOM05D002401 ORTHO05D007109 6.6e-14 80.9 98 46.9
A08p36820 Brassica napus HOM05D002401 ORTHO05D007109 1.1e-13 80.1 53 67.9
Phvul.002G015200 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 1.1e-13 80.1 105 47.6
MCO04G499 Micromonas commoda HOM05D002401 ORTHO05D007109 5.6e-13 77.8 75 48.0
CSS0015735 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 7.3e-13 77.4 99 46.5
CSS0046228 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.2e-12 76.6 134 40.3
Cre01.g010350 Chlamydomonas reinhardtii HOM05D002401 ORTHO05D007109 8.1e-12 73.9 75 46.7
SMO146G0125 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 1.8e-11 72.8 73 49.3
PGSC0003DMG400031780 Solanum tuberosum HOM05D002401 ORTHO05D007109 5.2e-11 71.2 37 91.9
SMO351G0240 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 4.1e-08 61.6 75 36.0
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 9.2e-08 60.5 92 38.0
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 9.2e-08 60.5 93 37.6
Potri.002G131000 Populus trichocarpa HOM05D002401 ORTHO05D006143 2.1e-07 59.3 93 37.6
TWI56G0576 Tripterygium wilfordii HOM05D002401 ORTHO05D006143 2.1e-07 59.3 93 37.6
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 2.7e-07 58.9 93 37.6
Phvul.007G045700 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 4.6e-07 58.2 52 59.6
PRCOL_00001966 Prasinoderma coloniale HOM05D002401 ORTHO05D007109 6.0e-07 57.8 90 36.7
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 7.8e-07 57.4 93 36.6
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 1.0e-06 57.0 108 35.2
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 1.0e-06 57.0 93 35.5
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 1.3e-06 56.6 93 36.6
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 1.7e-06 56.2 93 38.7
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 1.7e-06 56.2 93 34.4
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 2.3e-06 55.8 93 34.4
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 2.3e-06 55.8 93 36.6
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 2.3e-06 55.8 93 35.5
Os12g0596000 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D006143 3.0e-06 55.5 109 35.8
QL02p010939 Quercus lobata HOM05D002401 ORTHO05D006143 3.0e-06 55.5 93 35.5
BraA01t00664Z Brassica rapa HOM05D002401 ORTHO05D006143 3.9e-06 55.1 93 35.5
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 3.9e-06 55.1 93 34.4
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 3.9e-06 55.1 93 36.6
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 3.9e-06 55.1 93 36.6
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 35.5
Carub.0001s3634 Capsella rubella HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 36.6
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 36.6
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 36.6
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 37.6
Sp1g34610 Schrenkiella parvula HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 35.5
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 5.1e-06 54.7 93 36.6
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 6.6e-06 54.3 93 35.5
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 6.6e-06 54.3 93 35.5
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 6.6e-06 54.3 93 35.5
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 6.6e-06 54.3 93 36.6
Oeu015608.1 Olea europaea HOM05D002401 ORTHO05D006143 6.6e-06 54.3 93 35.5
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 6.6e-06 54.3 93 34.4
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 8.6e-06 53.9 93 35.5
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 8.6e-06 53.9 93 36.6
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 8.6e-06 53.9 93 34.4
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 8.6e-06 53.9 93 35.5
Medtr3g111580 Medicago truncatula HOM05D002401 ORTHO05D006143 8.6e-06 53.9 90 35.6
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 8.6e-06 53.9 93 35.5
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 8.6e-06 53.9 93 34.4


User provided reference genes

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