Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 0.0e+00 1624.8 859 100.0
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.4e-279 965.7 932 59.7
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 2.0e-262 909.4 924 58.4
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.1e-251 872.8 885 58.8
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 4.1e-106 390.2 875 35.4
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 8.6e-104 382.5 961 34.4
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 6.8e-101 372.9 898 35.0
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 3.2e-90 337.4 1057 29.5
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 2.7e-73 281.2 676 33.0
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 6.0e-73 280.0 999 27.8
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 1.3e-70 272.3 1084 28.3
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 8.1e-70 269.6 999 29.5
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 1.8e-69 268.5 620 34.5
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 1.1e-66 259.2 905 28.2
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 1.9e-66 258.5 1078 27.1
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 3.3e-63 247.7 1149 26.8
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 1.3e-62 245.7 983 26.7
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.3e-62 245.7 988 28.1
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 1.1e-58 232.6 1050 27.0
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 1.3e-56 225.7 822 29.1
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 1.3e-56 225.7 568 31.5
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 3.0e-56 224.6 872 29.5
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 3.9e-56 224.2 867 30.6
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 6.7e-56 223.4 1117 24.8
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 2.6e-52 211.5 899 26.7
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.6e-52 211.5 694 28.8
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 2.6e-52 211.5 1050 24.5
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 4.5e-52 210.7 1052 25.7
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 6.5e-51 206.8 1003 24.9
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 3.5e-49 201.1 1084 24.7
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 1.3e-48 199.1 1090 24.6
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 6.7e-48 196.8 693 28.9
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 1.5e-47 195.7 1066 25.0
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.5e-47 194.9 1014 25.6
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 9.7e-47 193.0 1102 24.6
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 9.0e-45 186.4 1052 24.0
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 1.2e-44 186.0 1067 24.0
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 2.0e-44 185.3 1102 23.5
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 4.5e-44 184.1 567 28.7
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 5.9e-44 183.7 1086 23.3
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 1.3e-43 182.6 553 28.4
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 2.2e-43 181.8 1062 23.4
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 3.2e-42 177.9 884 26.1
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 4.2e-42 177.6 1062 23.8
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 6.1e-41 173.7 997 25.2
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 7.9e-41 173.3 736 26.4
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 1.8e-40 172.2 887 26.6
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 2.3e-40 171.8 997 24.7
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 6.7e-40 170.2 857 25.4
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 2.0e-39 168.7 850 24.2
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 2.5e-39 168.3 865 25.1
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 3.3e-39 167.9 1009 25.4
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 3.3e-39 167.9 674 26.7
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 7.4e-39 166.8 864 26.2
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 2.2e-38 165.2 904 24.6
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 6.3e-38 163.7 857 25.1
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 1.1e-37 162.9 1042 23.8
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 1.8e-37 162.2 273 43.2
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 3.1e-37 161.4 971 25.0
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 1.7e-35 155.6 550 29.6
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 2.9e-35 154.8 997 23.7
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 5.0e-35 154.1 713 27.6
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 8.5e-35 153.3 529 28.7
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 7.2e-34 150.2 676 26.2
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 7.2e-34 150.2 994 23.2
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.2e-33 149.4 993 23.7
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 2.1e-33 148.7 271 39.1
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 3.6e-33 147.9 517 28.6
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 4.7e-33 147.5 216 44.0
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.7e-33 147.5 995 23.2
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 1.4e-32 146.0 841 24.3
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 2.3e-32 145.2 854 24.7
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 8.8e-32 143.3 665 26.8
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 7.4e-31 140.2 254 38.6
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 1.8e-29 135.6 1069 22.4
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.9e-26 125.6 995 22.1
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 2.3e-24 118.6 551 25.4
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 8.2e-22 110.2 268 35.1
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 1.1e-21 109.8 662 25.4
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 2.4e-21 108.6 266 32.7
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 2.9e-19 101.7 272 26.8
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 1.5e-18 99.4 280 28.9
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 4.2e-18 97.8 542 25.3
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 4.0e-16 91.3 525 24.0
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.2e-15 89.7 564 23.8
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 2.6e-15 88.6 559 25.0
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 2.6e-15 88.6 85 55.3
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 3.4e-15 88.2 516 24.6
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 2.2e-14 85.5 544 24.6
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 2.8e-14 85.1 548 23.0
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.7e-14 84.7 557 23.2
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 1.1e-13 83.2 560 22.7
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 2.4e-13 82.0 557 22.1
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 2.4e-13 82.0 535 24.1
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 4.1e-13 81.3 555 22.9
Actinidia38851 Actinidia chinensis HOM05D007562 ORTHO05D009721 7.0e-13 80.5 179 31.8
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 7.0e-13 80.5 563 22.7
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 9.1e-13 80.1 537 23.8
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 2.0e-12 79.0 543 22.3
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 2.0e-12 79.0 559 23.6
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 2.7e-12 78.6 508 23.4
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 2.7e-12 78.6 508 23.4
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 2.7e-12 78.6 94 47.9
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.7e-12 78.6 532 22.0
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 5.9e-12 77.4 568 25.2
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 5.9e-12 77.4 542 24.5
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 5.9e-12 77.4 560 22.5
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 7.7e-12 77.0 527 21.8
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.7e-11 75.9 522 23.2
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 2.2e-11 75.5 519 23.3
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.8e-11 74.7 149 34.9
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 6.5e-11 73.9 565 22.8
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 8.5e-11 73.6 464 22.4
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 1.1e-10 73.2 94 45.7
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 1.1e-10 73.2 512 24.2
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.1e-10 73.2 671 21.2
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 2.5e-10 72.0 107 41.1
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 2.5e-10 72.0 74 51.4
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 3.2e-10 71.6 546 22.2
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 3.2e-10 71.6 564 23.6
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 3.2e-10 71.6 538 23.2
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.2e-10 71.6 552 21.6
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 5.5e-10 70.9 114 42.1
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 5.5e-10 70.9 552 23.4
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 7.2e-10 70.5 585 23.8
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 7.2e-10 70.5 544 24.8
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 9.5e-10 70.1 598 22.6
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 9.5e-10 70.1 549 22.4
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 9.5e-10 70.1 622 22.8
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.2e-09 69.7 559 20.9
Sed0017940 Sechium edule HOM05D007562 ORTHO05D009721 1.2e-09 69.7 92 43.5
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.6e-09 69.3 96 41.7
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 2.7e-09 68.6 550 22.4
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.7e-09 68.6 555 20.9
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.6e-09 68.2 474 22.6
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 3.6e-09 68.2 158 34.8
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 4.7e-09 67.8 520 22.7
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 4.7e-09 67.8 564 22.7
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 4.7e-09 67.8 96 40.6
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 4.7e-09 67.8 540 22.4
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 6.1e-09 67.4 95 43.2
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 6.1e-09 67.4 546 22.2
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 8.0e-09 67.0 528 22.0
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.0e-08 66.6 527 23.9
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.0e-08 66.6 81 43.2
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 1.8e-08 65.9 103 39.8
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.8e-08 65.9 90 40.0
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 2.3e-08 65.5 493 23.7
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 2.3e-08 65.5 534 22.7
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.3e-08 65.5 543 22.1
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 3.0e-08 65.1 575 22.3
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 5.2e-08 64.3 550 22.7
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 5.2e-08 64.3 825 21.7
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 5.2e-08 64.3 570 21.1
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 6.8e-08 63.9 81 43.2
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 6.8e-08 63.9 671 20.1
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 6.8e-08 63.9 101 37.6
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 6.8e-08 63.9 528 22.7
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 6.8e-08 63.9 75 48.0
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 8.8e-08 63.5 676 21.2
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 8.8e-08 63.5 521 23.0
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.2e-07 63.2 80 46.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 1.2e-07 63.2 564 18.4
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.5e-07 62.8 547 21.4
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.0e-07 62.4 645 20.0
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 2.6e-07 62.0 495 22.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 2.6e-07 62.0 638 21.2
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 4.4e-07 61.2 505 21.0
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 4.4e-07 61.2 505 21.0
CsaV3_5G036320 Cucumis sativus L. HOM05D007562 ORTHO05D009721 4.4e-07 61.2 92 41.3
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 4.4e-07 61.2 554 21.8
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 5.7e-07 60.8 179 31.8
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 7.5e-07 60.5 410 24.6
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 7.5e-07 60.5 490 21.8
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 7.5e-07 60.5 92 38.0
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 9.8e-07 60.1 551 22.0
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 1.7e-06 59.3 503 22.1
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.7e-06 59.3 550 21.6
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.2e-06 58.9 523 21.2
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 4.9e-06 57.8 455 21.8
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 8.3e-06 57.0 560 21.6
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 8.3e-06 57.0 489 23.5


User provided reference genes

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