Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 4.9e-70 267.7 136 100.0
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 6.7e-35 151.0 71 98.6
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 1.3e-33 146.7 71 95.8
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 4.8e-17 91.7 76 60.5
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 4.8e-17 91.7 81 59.3
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 1.4e-16 90.1 77 61.0
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 1.8e-16 89.7 81 59.3
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 5.9e-15 84.7 76 57.9
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 5.9e-15 84.7 81 56.8
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 5.9e-15 84.7 100 50.0
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 7.7e-15 84.3 102 51.0
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.3e-14 83.6 80 53.8
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 1.3e-14 83.6 82 51.2
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 2.9e-14 82.4 84 54.8
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 5.0e-14 81.6 84 50.0
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 8.5e-14 80.9 86 47.7
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 2.5e-13 79.3 82 52.4
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 3.2e-13 79.0 84 47.6
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 3.2e-13 79.0 85 47.1
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 5.5e-13 78.2 97 50.5
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 1.2e-12 77.0 83 49.4
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 1.6e-12 76.6 93 50.5
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 1.6e-12 76.6 84 52.4
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 6.1e-12 74.7 96 49.0
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 1.0e-11 73.9 79 45.6
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 3.9e-11 72.0 79 48.1
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 5.1e-11 71.6 92 47.8
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 1.1e-10 70.5 81 44.4
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.1e-10 70.5 97 38.1
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 2.0e-10 69.7 78 52.6
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 2.0e-10 69.7 89 47.2
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 2.0e-10 69.7 72 47.2
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 2.6e-10 69.3 80 53.8
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 5.7e-10 68.2 90 44.4
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 1.7e-09 66.6 91 46.2
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 1.7e-09 66.6 83 48.2
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 1.7e-09 66.6 91 40.7
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 2.2e-09 66.2 87 48.3
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 2.8e-09 65.9 92 46.7
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 3.7e-09 65.5 83 41.0
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 4.8e-09 65.1 97 45.4
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 1.1e-08 63.9 79 45.6
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 1.8e-08 63.2 86 44.2
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 3.1e-08 62.4 83 45.8
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 5.3e-08 61.6 52 59.6
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 7.0e-08 61.2 52 59.6
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 9.1e-08 60.8 52 59.6
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 9.1e-08 60.8 83 44.6
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 1.2e-07 60.5 95 38.9
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 1.5e-07 60.1 36 66.7
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 1.5e-07 60.1 75 41.3
FAN03G0373 Fragaria x ananassa HOM05D008287 ORTHO05D010110 3.4e-07 58.9 52 59.6
arahy.Tifrunner.gnm1.ann1.7IIA7U Arachis hypogaea HOM05D008287 ORTHO05D010110 4.5e-07 58.5 84 38.1
arahy.Tifrunner.gnm1.ann1.LAB5TB Arachis hypogaea HOM05D008287 ORTHO05D010110 4.5e-07 58.5 84 38.1
Lsat_1_v5_gn_2_114761 Lactuca sativa HOM05D008287 ORTHO05D010110 4.5e-07 58.5 81 44.4
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 5.9e-07 58.2 84 51.2
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 7.7e-07 57.8 32 75.0
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 2.2e-06 56.2 84 50.0
CARHR286230 Cardamine hirsuta HOM05D013386 ORTHO05D010110 2.2e-06 56.2 78 48.7
Eucgr.G02829 Eucalyptus grandis HOM05D055458 ORTHO05D010110 2.9e-06 55.8 78 41.0
Carub.0008s0883 Capsella rubella HOM05D013386 ORTHO05D010110 3.8e-06 55.5 80 50.0
Aa31sc101G40 Aethionema arabicum HOM05D013386 ORTHO05D010110 6.5e-06 54.7 77 36.4


User provided reference genes

Program Settings