Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 9.4e-248 859.8 441 100.0
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 6.1e-247 857.1 441 99.8
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.3e-241 839.3 442 98.0
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.0e-230 803.1 442 93.0
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 7.5e-229 797.0 441 93.2
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.3e-224 781.2 470 87.2
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 2.2e-220 768.8 442 89.6
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.2e-215 753.1 442 88.5
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.3e-212 743.0 432 87.7
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.2e-211 738.4 432 88.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.5e-208 728.8 430 85.6
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.1e-206 723.4 430 84.9
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.2e-205 719.9 442 83.5
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.1e-203 713.4 442 82.4
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.6e-199 698.4 430 82.1
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 6.2e-199 697.6 433 82.2
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.8e-196 688.3 437 81.0
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.9e-195 686.0 431 81.0
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.9e-195 686.0 431 81.4
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.2e-195 684.9 431 81.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 7.1e-195 684.1 431 81.7
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.2e-194 683.3 430 80.2
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 2.7e-194 682.2 443 80.1
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 6.0e-194 681.0 442 79.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.0e-194 681.0 399 84.7
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.0e-193 680.2 433 80.1
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.3e-193 679.9 445 78.9
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-193 679.9 430 80.5
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-193 679.5 432 78.5
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.3e-193 679.1 435 79.5
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.3e-193 679.1 438 79.9
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.1e-192 676.8 424 80.2
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.1e-192 676.8 429 82.1
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-192 676.4 432 80.6
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 3.3e-192 675.2 435 78.6
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.3e-192 675.2 431 80.7
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 5.6e-192 674.5 427 79.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 7.3e-192 674.1 427 79.9
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.3e-191 673.3 432 78.7
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.3e-191 673.3 432 78.7
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.3e-191 673.3 432 78.7
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.3e-191 673.3 429 78.3
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.3e-191 673.3 428 80.8
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.6e-191 672.9 427 79.6
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-191 672.9 433 78.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.1e-191 672.5 422 79.6
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.1e-191 672.5 432 77.8
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-191 672.5 432 77.8
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.8e-191 672.2 432 79.2
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.8e-191 672.2 430 79.3
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.8e-191 672.2 419 81.6
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.6e-191 671.8 432 79.2
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.6e-191 671.8 432 79.2
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.8e-191 671.4 401 82.3
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 4.8e-191 671.4 419 80.0
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 4.8e-191 671.4 419 80.0
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 6.2e-191 671.0 432 78.0
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 6.2e-191 671.0 420 81.4
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 6.2e-191 671.0 430 80.0
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 6.2e-191 671.0 429 77.9
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 8.1e-191 670.6 432 78.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 8.1e-191 670.6 438 78.1
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.1e-190 670.2 432 79.4
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-190 670.2 433 78.1
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.1e-190 670.2 410 81.7
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-190 669.8 432 78.9
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.8e-190 669.5 444 77.0
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.8e-190 669.5 444 77.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.8e-190 669.5 436 78.7
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 2.4e-190 669.1 430 79.3
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.4e-190 669.1 441 77.3
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 5.3e-190 667.9 438 77.9
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 6.9e-190 667.5 431 79.4
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.2e-189 666.8 430 79.1
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.2e-189 666.8 429 79.3
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.2e-189 666.8 434 78.8
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.2e-189 666.8 434 78.8
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.5e-189 666.4 428 78.3
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.0e-189 666.0 432 77.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.0e-189 666.0 422 79.1
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.6e-189 665.6 450 76.2
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.6e-189 665.6 426 79.3
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.5e-189 664.8 428 78.3
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 5.8e-189 664.5 425 80.9
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 7.6e-189 664.1 390 83.6
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.3e-188 663.3 519 68.4
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.3e-188 663.3 430 77.7
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.1e-187 660.2 437 77.1
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.4e-187 659.8 428 77.8
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.4e-187 659.1 428 77.6
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.4e-187 659.1 417 79.1
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 3.2e-187 658.7 439 75.2
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 3.2e-187 658.7 432 76.4
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 4.2e-187 658.3 559 64.6
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.2e-186 656.8 442 77.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 6.0e-186 654.4 431 77.7
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.0e-186 654.4 416 79.1
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.9e-186 654.1 454 74.7
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.0e-185 652.1 427 76.6
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.9e-184 649.4 433 76.7
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.3e-184 648.7 410 79.5
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 7.4e-184 647.5 429 75.8
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.3e-183 646.7 489 70.8
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.6e-183 646.4 442 74.2
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.1e-183 646.0 432 76.6
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 4.8e-183 644.8 434 74.4
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.4e-182 643.3 429 75.5
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.8e-182 642.9 442 73.8
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 9.0e-182 640.6 430 76.0
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-181 640.2 467 71.5
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.4e-181 638.6 434 76.0
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.4e-181 638.6 444 74.5
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 4.5e-181 638.3 416 77.2
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 7.6e-181 637.5 427 74.9
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.9e-180 635.6 429 74.4
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 4.9e-180 634.8 430 73.5
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 4.9e-180 634.8 438 73.1
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 6.4e-180 634.4 410 78.3
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-179 632.5 428 75.7
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.0e-177 625.5 430 74.2
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 6.7e-177 624.4 433 73.2
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 5.6e-176 621.3 397 78.3
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 2.8e-175 619.0 423 76.6
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.4e-174 616.7 396 77.3
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.8e-174 616.3 424 75.2
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 2.4e-174 615.9 406 76.4
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.0e-174 615.1 384 77.3
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 5.3e-174 614.8 384 77.9
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.2e-173 613.6 380 81.6
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.0e-173 612.8 433 73.4
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.1e-170 602.8 391 75.7
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.7e-168 594.7 431 71.2
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 8.2e-167 590.9 349 83.7
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 2.2e-164 582.8 344 86.3
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.7e-162 575.9 341 85.0
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 9.1e-158 560.8 322 84.5
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 4.5e-157 558.5 427 68.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 7.9e-154 547.7 337 82.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.4e-153 547.0 364 74.7
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 2.4e-150 536.2 337 81.9
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 3.5e-149 532.3 314 82.2
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.3e-148 530.4 347 72.6
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 6.3e-143 511.5 380 68.4
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.1e-142 510.8 371 69.3
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 5.9e-141 505.0 366 71.0
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.7e-138 496.1 345 73.6
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 7.5e-136 488.0 433 61.0
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.2e-127 459.9 261 85.8
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 4.5e-125 452.2 330 67.6
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.2e-119 433.3 275 78.5
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 8.6e-116 421.4 385 60.0
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 8.0e-114 414.8 265 78.9
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.3e-100 370.9 230 80.9
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 8.3e-95 351.7 232 77.6
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 5.8e-88 328.9 182 89.6
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.8e-88 328.9 244 68.4
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-81 308.1 181 84.0
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.8e-81 307.4 355 51.0
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.5e-80 304.3 365 45.5
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.1e-70 271.6 155 83.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.0e-63 248.4 202 62.9
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.0e-63 248.4 202 62.9
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.1e-61 240.7 146 80.1
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 8.2e-58 228.8 220 61.4
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-57 228.4 245 56.7
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.4e-38 164.9 99 82.8
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.4e-38 164.9 145 57.9
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.5e-32 144.8 220 48.2
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.7e-27 125.6 298 34.9
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.0e-23 115.5 78 75.6
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.8e-23 113.6 60 96.7
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 9.8e-19 99.0 80 67.5
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 6.3e-18 96.3 63 77.8
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 6.3e-18 96.3 63 77.8
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 8.3e-18 95.9 82 61.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 7.7e-16 89.4 46 91.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.0e-15 86.7 55 83.6
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 8.5e-15 85.9 83 57.8
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.2e-14 84.0 90 50.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 9.2e-09 65.9 75 52.0
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 1.2e-08 65.5 43 76.7
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.7e-08 64.3 75 53.3
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 3.5e-08 63.9 75 53.3
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.7e-07 61.6 38 78.9
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 5.0e-07 60.1 28 85.7


User provided reference genes

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