Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049250.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 5.4e-50 200.7 100 100.0
ATMG00570 Arabidopsis thaliana HOM05D007877 ORTHO05D009957 6.4e-27 124.0 122 57.4
BolC4t23493H Brassica oleracea HOM05D007877 ORTHO05D009957 6.4e-27 124.0 122 57.4
C04p19590 Brassica napus HOM05D007877 ORTHO05D009957 8.4e-27 123.6 121 57.9
Solyc00g500168.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 8.4e-27 123.6 122 59.0
Solyc00g500237.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 8.4e-27 123.6 122 59.0
Solyc00g500346.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 8.4e-27 123.6 122 59.0
Solyc00g500357.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 8.4e-27 123.6 122 59.0
Aa31csc239G30 Aethionema arabicum HOM05D007877 ORTHO05D009957 1.4e-26 122.9 122 57.4
Zm00001eb436210 Zea mays HOM05D007877 ORTHO05D009957 3.2e-26 121.7 122 56.6
Zm00001eb436260 Zea mays HOM05D007877 ORTHO05D009957 3.2e-26 121.7 122 56.6
Zm00001eb436450 Zea mays HOM05D007877 ORTHO05D009957 3.2e-26 121.7 122 56.6
Zm00001eb436490 Zea mays HOM05D007877 ORTHO05D009957 3.2e-26 121.7 122 56.6
Zm00001eb441030 Zea mays HOM05D007877 ORTHO05D009957 3.2e-26 121.7 122 56.6
Lj2P1225T96 Lonicera japonica HOM05D007877 ORTHO05D009957 7.1e-26 120.6 122 58.2
DCAR_032450 Daucus carota HOM05D007877 ORTHO05D009957 1.2e-25 119.8 122 58.2
CARHR282940 Cardamine hirsuta HOM05D007877 ORTHO05D009957 1.6e-25 119.4 122 56.6
HanXRQChr00c0055g0571431 Helianthus annuus HOM05D007877 ORTHO05D009957 1.6e-25 119.4 122 58.2
HanXRQChr00c0234g0572751 Helianthus annuus HOM05D007877 ORTHO05D009957 1.6e-25 119.4 122 58.2
HanXRQMTg0579501 Helianthus annuus HOM05D007877 ORTHO05D009957 1.6e-25 119.4 122 58.2
Lsat_1_v5_gn_2_125060 Lactuca sativa HOM05D007877 ORTHO05D009957 1.6e-25 119.4 122 58.2
CANSAT16G0008 Cannabis sativa HOM05D007877 ORTHO05D009957 2.1e-25 119.0 122 57.4
Solyc05g023970.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 4.6e-25 117.9 108 62.0
Thhalv10015628m.g Eutrema salsugineum HOM05D007877 ORTHO05D009957 8.7e-24 113.6 108 61.1
CAN.G1159.16 Capsicum annuum HOM05D007877 ORTHO05D009957 2.5e-23 112.1 122 55.7
HanXRQChr01g0007101 Helianthus annuus HOM05D007877 ORTHO05D009957 7.3e-23 110.5 79 69.6
RcHm_v2.0_MTg0499111 Rosa chinensis HOM05D007877 ORTHO05D009957 7.3e-23 110.5 122 54.1
SHI55214 Sapria himalayana HOM05D007877 ORTHO05D009957 9.6e-23 110.2 123 54.5
BraSC48t46272Z Brassica rapa HOM05D007877 ORTHO05D009957 2.8e-22 108.6 113 54.9
BraSC177t45764Z Brassica rapa HOM05D007877 ORTHO05D009957 1.4e-21 106.3 113 54.0
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 6.9e-21 104.0 111 55.0
TAR371G0168 Trochodendron aralioides HOM05D007877 ORTHO05D009957 9.0e-21 103.6 113 54.9
CsaV3_UNG208000 Cucumis sativus L. HOM05D007877 ORTHO05D009957 3.8e-19 98.2 113 54.0
arahy.Tifrunner.gnm1.ann1.SK2G41 Arachis hypogaea HOM05D007877 ORTHO05D009957 1.4e-18 96.3 107 53.3
Lalb_Chr00c29g0408181 Lupinus albus HOM05D007877 ORTHO05D009957 9.3e-18 93.6 107 52.3
Lalb_Chr22g0358751 Lupinus albus HOM05D007877 ORTHO05D009957 9.3e-18 93.6 107 52.3
Peaxi162Scf00508g00001 Petunia axillaris HOM05D007877 ORTHO05D009957 6.0e-17 90.9 94 60.6
TPR.G17000 Trifolium pratense HOM05D007877 ORTHO05D009957 1.3e-16 89.7 52 82.7
Aqoxy12s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 2.3e-16 89.0 113 49.6
Aqoxy38s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 2.3e-16 89.0 113 49.6
MD15G1309600 Malus domestica HOM05D007877 ORTHO05D009957 2.3e-16 89.0 74 58.1
Aqoxy1G02979 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 5.1e-16 87.8 113 49.6
Lsat_1_v5_gn_9_49261 Lactuca sativa HOM05D007877 ORTHO05D009957 1.1e-15 86.7 52 82.7
Nitab4.5_0009703g0110 Nicotiana tabacum HOM05D007877 ORTHO05D009957 1.1e-15 86.7 121 47.1
Phvul.005G124700 Phaseolus vulgaris HOM05D007877 ORTHO05D009957 2.5e-15 85.5 57 73.7
Gohir.A01G022475 Gossypium hirsutum HOM05D007877 ORTHO05D009957 3.3e-15 85.1 52 80.8
Psat0s1774g0160 Pisum sativum HOM05D007877 ORTHO05D009957 4.0e-13 78.2 98 51.0
LjContig00315g0025322 Lotus japonicus HOM05D007877 ORTHO05D009957 5.3e-13 77.8 122 45.1
Solyc12g035750.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 6.9e-13 77.4 69 59.4
Nitab4.5_0004471g0150 Nicotiana tabacum HOM05D007877 ORTHO05D009957 1.7e-11 72.8 90 52.2
unitig_87.g27972 Utricularia gibba HOM05D007877 ORTHO05D009957 4.9e-11 71.2 95 47.4
SEGI_02417 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 6.5e-11 70.9 56 62.5
CAN.G628.86 Capsicum annuum HOM05D007877 ORTHO05D009957 1.9e-10 69.3 45 77.8
CARHR288300 Cardamine hirsuta HOM05D007877 ORTHO05D009957 3.2e-10 68.6 43 76.7
SEGI_25147 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 2.1e-09 65.9 52 63.5
EL10Ac8g19721 Beta vulgaris HOM05D007877 ORTHO05D009957 2.7e-09 65.5 65 53.8
Nitab4.5_0000010g0230 Nicotiana tabacum HOM05D007877 ORTHO05D009957 7.9e-09 63.9 47 68.1
PSO541G3164 Papaver somniferum HOM05D007877 ORTHO05D009957 1.3e-08 63.2 54 57.4
PSO384G0556 Papaver somniferum HOM05D007877 ORTHO05D009957 2.3e-08 62.4 54 57.4
AUR62026822 Chenopodium quinoa HOM05D000743 ORTHO05D000580 3.0e-08 62.0 102 45.1
AUR62042354 Chenopodium quinoa HOM05D000743 ORTHO05D000580 3.0e-08 62.0 86 47.7
AUR62043788 Chenopodium quinoa HOM05D000743 ORTHO05D000580 3.0e-08 62.0 86 47.7
RhsimMtG0001700 Rhododendron simsii HOM05D007877 ORTHO05D009957 3.0e-08 62.0 87 47.1
RhsimMtG0004900 Rhododendron simsii HOM05D007877 ORTHO05D009957 3.0e-08 62.0 87 47.1
PSO133G0099 Papaver somniferum HOM05D007877 ORTHO05D009957 2.5e-07 58.9 54 55.6
Solyc10g062070.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.3e-06 56.6 85 44.7
SHI24736 Sapria himalayana HOM05D007877 ORTHO05D009957 1.6e-06 56.2 63 50.8
Nitab4.5_0001681g0060 Nicotiana tabacum HOM05D007877 ORTHO05D009957 2.8e-06 55.5 34 76.5
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 4.8e-06 54.7 88 36.4


User provided reference genes

Program Settings