Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 3.2e-226 788.1 401 100.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.2e-222 776.2 400 98.5
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.7e-200 700.3 400 89.2
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-199 699.9 400 89.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.5e-199 699.5 404 87.6
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.8e-198 695.3 400 89.8
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 6.1e-169 597.8 410 73.9
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 4.8e-166 588.2 406 75.4
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 7.7e-164 580.9 418 72.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 8.0e-161 570.9 403 73.2
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.4e-160 570.1 419 69.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.8e-160 569.7 410 71.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.1e-159 567.0 332 83.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.5e-159 566.6 406 72.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.5e-159 566.6 409 71.6
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.0e-159 566.2 408 71.3
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.3e-159 565.5 359 79.1
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.3e-158 563.5 406 72.2
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.7e-158 563.1 421 71.0
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.2e-158 562.8 403 72.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 3.7e-158 562.0 404 72.0
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.7e-158 562.0 411 71.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.8e-158 561.6 419 69.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 8.2e-158 560.8 408 71.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 8.2e-158 560.8 411 70.6
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.4e-157 560.1 412 71.6
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.8e-157 559.7 350 79.1
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.4e-157 559.3 359 78.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.1e-157 558.9 407 71.3
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 7.7e-156 554.3 413 68.8
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.5e-154 550.1 406 71.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.9e-154 549.7 406 70.9
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 5.5e-154 548.1 360 75.6
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 7.2e-154 547.7 414 69.8
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 3.6e-153 545.4 407 70.3
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.6e-153 545.4 407 69.5
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.4e-152 543.5 410 69.3
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.0e-152 542.3 405 71.6
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.0e-152 542.3 405 71.6
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.5e-151 540.0 403 70.7
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.4e-151 538.9 316 84.5
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 4.4e-151 538.5 314 83.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.7e-151 538.1 406 69.5
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.3e-150 537.0 406 69.2
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.1e-149 533.9 403 70.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-149 533.9 408 68.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.4e-149 533.5 408 68.4
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.1e-149 531.9 403 69.2
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 5.4e-149 531.6 411 68.6
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.1e-149 530.8 403 68.5
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-148 530.4 403 69.0
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.6e-148 530.0 410 68.5
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.0e-148 529.6 407 71.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 3.5e-148 528.9 407 69.5
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.7e-148 527.7 408 68.6
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.3e-147 526.9 416 68.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.2e-147 526.2 348 75.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.9e-146 523.1 361 72.3
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.9e-146 523.1 413 67.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.5e-146 521.5 414 66.4
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 4.7e-145 518.5 406 66.5
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.1e-145 518.1 411 67.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 3.0e-144 515.8 316 80.7
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 4.0e-144 515.4 406 68.0
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 5.2e-144 515.0 410 66.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.5e-143 511.1 330 75.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 2.2e-142 509.6 422 64.5
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.2e-140 503.8 418 64.6
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.6e-140 503.4 411 66.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.6e-140 503.4 409 67.2
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.5e-138 496.9 409 67.0
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 7.3e-138 494.6 431 61.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.1e-137 493.0 410 65.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 4.0e-136 488.8 413 63.7
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 7.5e-135 484.6 408 63.5
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-134 483.8 409 64.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.8e-133 479.9 426 59.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.4e-133 479.6 405 63.7
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 4.1e-133 478.8 409 63.6
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 4.1e-133 478.8 421 59.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.2e-132 477.2 412 63.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.2e-132 477.2 412 63.1
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.2e-132 477.2 403 64.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.0e-132 476.5 409 63.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.0e-132 476.5 409 63.3
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 3.5e-132 475.7 407 63.6
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.0e-131 474.2 411 63.7
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.6e-131 471.1 410 63.2
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 5.6e-130 468.4 411 62.5
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.2e-129 467.2 403 62.5
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.1e-129 466.5 418 61.0
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.8e-128 463.4 409 61.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.4e-126 454.9 294 75.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.0e-123 447.6 285 78.2
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-122 443.7 393 63.4
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 4.3e-122 442.2 361 64.8
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-120 437.6 410 57.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.4e-119 432.6 340 64.4
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 4.4e-119 432.2 275 76.7
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.7e-118 430.3 286 73.8
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.9e-118 428.7 335 64.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.3e-118 427.9 437 57.0
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.0e-115 421.0 369 64.2
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.5e-114 417.2 394 59.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.9e-114 416.8 416 58.2
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 7.3e-114 414.8 411 56.9
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 6.2e-113 411.8 440 53.9
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 3.1e-112 409.5 384 59.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 5.8e-111 405.2 401 55.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 9.9e-111 404.4 343 63.6
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 7.3e-106 388.3 336 58.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 3.1e-96 356.3 423 49.2
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.7e-94 350.5 343 52.8
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 9.6e-90 334.7 279 66.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.7e-86 323.9 336 53.6
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.4e-85 320.1 444 45.0
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.5e-85 318.9 402 50.2
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 3.8e-78 296.2 232 69.4
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.5e-77 293.5 322 50.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 3.7e-73 279.6 325 47.4
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 4.6e-68 262.7 359 42.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 5.0e-54 216.1 156 67.3
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.2e-53 213.0 158 67.1
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 8.5e-46 188.7 151 71.5
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 3.6e-44 183.3 248 45.2
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 2.6e-42 177.2 99 87.9
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 5.9e-39 166.0 130 73.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 5.0e-38 162.9 121 67.8
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.7e-36 157.1 114 69.3
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-35 154.1 157 50.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.2e-35 152.9 135 63.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.8e-35 152.5 134 61.9
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-34 151.8 182 52.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 7.0e-32 142.5 100 68.0
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.3e-30 138.3 158 48.1
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-30 138.3 158 46.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.5e-29 132.9 141 50.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 3.6e-28 130.2 168 46.4
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.0e-27 127.1 160 46.9
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-26 124.8 168 44.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 4.9e-25 119.8 134 54.5
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 8.3e-25 119.0 73 75.3
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 4.1e-24 116.7 79 72.2
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.2e-23 115.2 84 63.1
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.1e-20 102.8 98 61.2
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 4.4e-18 96.7 128 43.0
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 7.0e-16 89.4 153 34.6
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.0e-15 87.8 113 44.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.0e-15 87.8 113 44.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.1e-11 75.5 56 64.3
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.8e-11 74.7 68 55.9
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 4.9e-09 66.6 42 71.4
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.7e-07 60.8 37 81.1
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.7e-07 60.8 37 81.1
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.7e-07 60.8 37 81.1
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.0e-06 58.9 43 69.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.9e-06 57.0 78 42.3
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 8.6e-06 55.8 54 46.3


User provided reference genes

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