Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 3.2e-105 385.2 205 100.0
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.1e-100 370.2 201 98.0
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 2.7e-88 328.9 205 82.9
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 6.7e-79 297.7 209 75.1
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 2.5e-78 295.8 211 73.9
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 8.4e-74 280.8 197 76.6
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 8.4e-66 254.2 190 70.5
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 1.0e-63 247.3 182 70.3
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.3e-62 241.9 188 68.1
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 4.3e-62 241.9 186 67.7
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 5.7e-62 241.5 180 69.4
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.7e-62 241.5 179 69.3
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.3e-61 240.4 181 68.5
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 1.3e-61 240.4 180 67.2
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 2.1e-61 239.6 183 68.3
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 6.3e-61 238.0 189 66.1
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 6.3e-61 238.0 186 66.1
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 6.3e-61 238.0 185 65.4
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 6.3e-61 238.0 185 68.1
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 8.2e-61 237.7 181 67.4
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 1.1e-60 237.3 180 67.8
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.4e-60 236.9 190 63.7
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 1.4e-60 236.9 185 68.1
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 1.8e-60 236.5 181 65.7
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.8e-60 236.5 185 67.0
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 3.1e-60 235.7 181 65.7
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 4.1e-60 235.3 184 67.9
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 4.1e-60 235.3 184 67.9
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 4.1e-60 235.3 181 64.1
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 6.9e-60 234.6 180 67.2
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 6.9e-60 234.6 188 65.4
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 9.0e-60 234.2 182 65.9
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 9.0e-60 234.2 184 68.5
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.2e-59 233.8 177 70.1
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.5e-59 233.4 180 68.3
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 2.0e-59 233.0 184 67.4
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 2.0e-59 233.0 184 67.4
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 2.0e-59 233.0 185 64.3
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.0e-59 233.0 189 64.0
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 2.0e-59 233.0 181 64.6
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.6e-59 232.6 187 65.8
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.6e-59 232.6 181 64.6
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.6e-59 232.6 180 65.0
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.6e-59 232.6 179 66.5
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 3.4e-59 232.3 180 65.6
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.0e-58 230.7 177 66.7
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.3e-58 230.3 177 66.1
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 1.3e-58 230.3 181 65.2
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 1.7e-58 229.9 184 64.7
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.7e-58 229.9 195 63.6
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 2.2e-58 229.6 182 66.5
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 2.9e-58 229.2 180 65.0
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 3.8e-58 228.8 189 64.0
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 5.0e-58 228.4 184 66.3
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 5.0e-58 228.4 181 65.2
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 8.5e-58 227.6 189 62.4
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 8.5e-58 227.6 186 65.6
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 1.4e-57 226.9 186 64.0
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 1.9e-57 226.5 190 62.1
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.9e-57 226.5 187 64.2
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 1.9e-57 226.5 183 66.7
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 3.2e-57 225.7 183 65.0
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 3.2e-57 225.7 186 64.0
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 4.2e-57 225.3 184 65.2
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.2e-56 223.8 183 65.6
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 4.6e-56 221.9 185 64.3
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 7.9e-56 221.1 188 62.8
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 7.9e-56 221.1 182 61.5
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 7.9e-56 221.1 179 65.4
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 1.3e-55 220.3 186 64.5
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.3e-55 220.3 184 64.1
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 2.3e-55 219.5 181 64.6
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 3.9e-55 218.8 179 62.0
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 3.9e-55 218.8 195 61.5
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 1.1e-54 217.2 178 64.6
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 4.3e-54 215.3 205 59.0
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 5.7e-54 214.9 205 59.0
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 7.4e-54 214.5 188 60.6
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 1.6e-53 213.4 188 61.2
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 1.1e-52 210.7 186 58.6
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.1e-52 210.7 183 63.4
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.4e-52 210.3 177 59.9
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 9.1e-52 207.6 182 62.1
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 1.2e-51 207.2 179 60.3
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 5.9e-51 204.9 195 58.5
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 5.0e-50 201.8 193 59.1
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.1e-49 200.7 184 59.2
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 1.9e-49 199.9 180 60.0
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 7.2e-49 198.0 130 73.1
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 7.2e-49 198.0 216 53.7
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 2.7e-48 196.1 184 57.1
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.7e-48 196.1 215 54.0
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 6.1e-48 194.9 184 57.1
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 6.1e-48 194.9 185 57.8
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 5.1e-47 191.8 202 54.0
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 1.5e-46 190.3 139 68.3
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 5.7e-46 188.3 157 65.6
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 5.3e-44 181.8 152 60.5
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.0e-43 179.9 167 61.1
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 7.7e-43 177.9 181 54.1
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 1.6e-40 170.2 187 51.9
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 7.9e-40 167.9 146 64.4
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.2e-39 165.2 146 65.1
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 5.2e-39 165.2 134 61.9
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.0e-38 163.3 148 62.8
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 9.7e-38 161.0 142 62.7
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.8e-37 159.5 98 74.5
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 2.0e-35 153.3 176 47.7
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.5e-35 152.5 148 58.8
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 8.5e-34 147.9 177 50.3
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.4e-31 140.6 96 67.7
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 7.5e-30 134.8 197 38.6
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 9.7e-30 134.4 180 43.3
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 9.1e-28 127.9 89 66.3
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 5.9e-27 125.2 179 39.7
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 5.0e-26 122.1 182 38.5
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.0e-19 100.1 176 39.8
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.5e-17 93.2 110 54.5
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 1.4e-15 87.4 87 58.6
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.8e-15 87.0 87 59.8
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 3.0e-15 86.3 140 40.7
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 1.3e-13 80.9 91 53.8
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 3.7e-13 79.3 116 42.2
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.6e-11 73.9 196 34.2
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 1.9e-09 67.0 64 54.7
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 8.9e-07 58.2 137 29.2


User provided reference genes

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