Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g047670.2 Solanum lycopersicum HOM05D002963 ORTHO05D003302 4.6e-58 227.6 111 100.0
Sopen04g017740 Solanum pennellii HOM05D002963 ORTHO05D003302 1.2e-37 159.8 86 96.5
CAN.G66.5 Capsicum annuum HOM05D002963 ORTHO05D003302 2.1e-34 149.1 89 89.9
Peaxi162Scf00577g00315 Petunia axillaris HOM05D002963 ORTHO05D003302 4.8e-31 137.9 89 85.4
Manes.13G153900 Manihot esculenta HOM05D002963 ORTHO05D006865 6.9e-30 134.0 91 78.0
SalBow8G3179 Salvia bowleyana HOM05D002963 ORTHO05D003302 7.6e-29 130.6 86 75.6
Oeu046364.1 Olea europaea HOM05D002963 ORTHO05D003302 1.3e-28 129.8 89 78.7
Thhalv10005010m.g Eutrema salsugineum HOM05D002963 ORTHO05D003302 2.9e-28 128.6 89 74.2
Migut.H02546 Erythranthe guttata HOM05D002963 ORTHO05D003302 4.9e-28 127.9 86 79.1
A06p34520 Brassica napus HOM05D002963 ORTHO05D003302 6.4e-28 127.5 89 74.2
C07p44030 Brassica napus HOM05D002963 ORTHO05D003302 6.4e-28 127.5 89 74.2
BolC7t44927H Brassica oleracea HOM05D002963 ORTHO05D003302 6.4e-28 127.5 89 74.2
BraA06t26380Z Brassica rapa HOM05D002963 ORTHO05D003302 6.4e-28 127.5 89 74.2
MSTRG.23233 Avicennia marina HOM05D002963 ORTHO05D003302 8.4e-28 127.1 83 80.7
CARHR189940 Cardamine hirsuta HOM05D002963 ORTHO05D003302 1.1e-27 126.7 89 73.0
Hma1.2p1_0050F.1_g029060 Hydrangea macrophylla HOM05D002963 ORTHO05D003302 1.1e-27 126.7 87 75.9
Dinv03907 Davidia involucrata HOM05D002963 ORTHO05D003302 1.4e-27 126.3 83 77.1
AL6G34830 Arabidopsis lyrata HOM05D002963 ORTHO05D003302 4.2e-27 124.8 89 70.8
AT5G23550 Arabidopsis thaliana HOM05D002963 ORTHO05D003302 4.2e-27 124.8 89 70.8
Carub.0006s2133 Capsella rubella HOM05D002963 ORTHO05D003302 5.5e-27 124.4 89 70.8
Nn5g27159 Nelumbo nucifera HOM05D002963 ORTHO05D003302 9.3e-27 123.6 86 72.1
Sp2g23640 Schrenkiella parvula HOM05D002963 ORTHO05D003302 9.3e-27 123.6 89 70.8
CANSAT54G0177 Cannabis sativa HOM05D002963 ORTHO05D003302 1.2e-26 123.2 87 72.4
THA.LOC104800518 Tarenaya hassleriana HOM05D002963 ORTHO05D003302 1.6e-26 122.9 89 68.5
Aa31LG11G2960 Aethionema arabicum HOM05D002963 ORTHO05D003302 2.1e-26 122.5 89 69.7
Ciclev10026599m.g Citrus clementina HOM05D002963 ORTHO05D003302 2.1e-26 122.5 90 72.2
Potri.004G135000 Populus trichocarpa HOM05D002963 ORTHO05D003302 2.7e-26 122.1 91 70.3
HanXRQChr12g0381771 Helianthus annuus HOM05D002963 ORTHO05D003302 3.5e-26 121.7 89 69.7
Lsat_1_v5_gn_5_71580 Lactuca sativa HOM05D002963 ORTHO05D003302 3.5e-26 121.7 88 70.5
Cc00_g14800 Coffea canephora HOM05D002963 ORTHO05D003302 4.6e-26 121.3 88 75.0
Gohir.A10G155700 Gossypium hirsutum HOM05D002963 ORTHO05D003302 4.6e-26 121.3 92 70.7
PSO210G6138 Papaver somniferum HOM05D002963 ORTHO05D003302 6.0e-26 120.9 87 71.3
unitig_60.g25586 Utricularia gibba HOM05D002963 ORTHO05D003302 6.0e-26 120.9 86 73.3
MBI06_g43030_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 7.9e-26 120.6 88 71.6
MD15G1140900 Malus domestica HOM05D002963 ORTHO05D003302 7.9e-26 120.6 90 71.1
Actinidia36576 Actinidia chinensis HOM05D002963 ORTHO05D003302 1.0e-25 120.2 89 74.2
BcaC04g23503 Brassica carinata HOM05D002963 ORTHO05D003302 1.3e-25 119.8 89 67.4
Gorai.011G120800 Gossypium raimondii HOM05D002963 ORTHO05D003302 1.3e-25 119.8 92 69.6
Aqoxy5G01844 Aquilegia oxysepala HOM05D002963 ORTHO05D003302 2.3e-25 119.0 88 68.2
CiPaw.15G185200 Carya illinoinensis HOM05D002963 ORTHO05D003302 3.0e-25 118.6 86 72.1
BcaB04g19860 Brassica carinata HOM05D002963 ORTHO05D003302 3.9e-25 118.2 89 66.3
Duzib147G0755 Durio zibethinus HOM05D002963 ORTHO05D003302 5.1e-25 117.9 91 68.1
QL10p037816 Quercus lobata HOM05D002963 ORTHO05D003302 5.1e-25 117.9 89 69.7
Gohir.D10G109700 Gossypium hirsutum HOM05D002963 ORTHO05D003302 6.7e-25 117.5 92 68.5
GSVIVG01000249001 Vitis vinifera HOM05D002963 ORTHO05D003302 6.7e-25 117.5 91 68.1
DCAR_009621 Daucus carota HOM05D002963 ORTHO05D003302 8.7e-25 117.1 88 70.5
Atru.chr3.1450 Acer truncatum HOM05D002963 ORTHO05D003302 1.1e-24 116.7 91 69.2
Eucgr.I00021 Eucalyptus grandis HOM05D002963 ORTHO05D003302 1.1e-24 116.7 90 66.7
PGR119G1226 Punica granatum HOM05D002963 ORTHO05D003302 1.5e-24 116.3 89 66.3
Psat1g113520 Pisum sativum HOM05D002963 ORTHO05D003302 3.3e-24 115.2 92 68.5
Prupe.4G288900 Prunus persica HOM05D002963 ORTHO05D003302 3.3e-24 115.2 92 66.3
Sed0020986 Sechium edule HOM05D002963 ORTHO05D003302 3.3e-24 115.2 93 65.6
COL.COLO4_33525 Corchorus olitorius HOM05D002963 ORTHO05D003302 4.3e-24 114.8 91 64.8
MELO3C023206.2 Cucumis melo HOM05D002963 ORTHO05D003302 5.6e-24 114.4 93 65.6
CsaV3_2G019650 Cucumis sativus L. HOM05D002963 ORTHO05D003302 5.6e-24 114.4 93 65.6
TPR.G5840 Trifolium pratense HOM05D002963 ORTHO05D003302 5.6e-24 114.4 92 68.5
Sc16g0009900 Simmondsia chinensis HOM05D002963 ORTHO05D003302 7.4e-24 114.0 87 67.8
Thecc.01G146100 Theobroma cacao HOM05D002963 ORTHO05D003302 7.4e-24 114.0 91 65.9
HPP92_016116 Vanilla planifolia HOM05D002963 ORTHO05D003302 1.3e-23 113.2 81 69.1
CDE02G1315 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 2.8e-23 112.1 86 66.3
CSS0028838 Camellia sinensis var. sinensis HOM05D002963 ORTHO05D003302 3.7e-23 111.7 89 69.7
A09p06880 Brassica napus HOM05D002963 ORTHO05D003302 6.2e-23 110.9 91 63.7
Cfa020925 Carpinus fangiana HOM05D002963 ORTHO05D003302 8.2e-23 110.5 94 63.8
CDE08G0486 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 1.8e-22 109.4 86 64.0
Glyma.09G156800 Glycine max HOM05D002963 ORTHO05D003302 1.8e-22 109.4 92 64.1
Os02g0564500 Oryza sativa ssp. japonica HOM05D002963 ORTHO05D003302 1.8e-22 109.4 86 62.8
VMungo0464G0114 Vigna mungo HOM05D002963 ORTHO05D003302 4.0e-22 108.2 92 65.2
Ca_25249_v3 Cicer arietinum L. HOM05D002963 ORTHO05D003302 6.9e-22 107.5 89 62.9
Glyma.16G207600 Glycine max HOM05D002963 ORTHO05D003302 9.0e-22 107.1 92 62.0
Zm00001eb182550 Zea mays HOM05D002963 ORTHO05D003302 9.0e-22 107.1 88 59.1
PSO447G0091 Papaver somniferum HOM05D002963 ORTHO05D003302 3.4e-21 105.1 87 66.7
Lalb_Chr19g0131401 Lupinus albus HOM05D002963 ORTHO05D003302 5.8e-21 104.4 93 62.4
EL10Ac4g09731 Beta vulgaris HOM05D002963 ORTHO05D003302 7.6e-21 104.0 91 61.5
Lj2g0002491 Lotus japonicus HOM05D002963 ORTHO05D003302 7.6e-21 104.0 92 60.9
ATR1089G145 Amborella trichopoda HOM05D002963 ORTHO05D003302 1.3e-20 103.2 86 61.6
FAN23G2676 Fragaria x ananassa HOM05D002963 ORTHO05D003302 2.9e-20 102.1 118 52.5
ECA233G4996 Erigeron canadensis HOM05D002963 ORTHO05D003302 4.9e-20 101.3 80 65.0
arahy.Tifrunner.gnm1.ann1.1SSJ6X Arachis hypogaea HOM05D002963 ORTHO05D003302 1.4e-19 99.8 92 58.7
arahy.Tifrunner.gnm1.ann1.9IQG37 Arachis hypogaea HOM05D002963 ORTHO05D003302 1.4e-19 99.8 92 58.7
FAN28G1383 Fragaria x ananassa HOM05D002963 ORTHO05D003302 1.4e-19 99.8 113 53.1
RcHm_v2.0_Chr3g0485031 Rosa chinensis HOM05D002963 ORTHO05D003302 1.4e-19 99.8 113 52.2
FAN19G0921 Fragaria x ananassa HOM05D002963 ORTHO05D003302 2.5e-19 99.0 113 52.2
FvH4_1g25890 Fragaria vesca HOM05D002963 ORTHO05D003302 3.2e-19 98.6 113 51.3
vmacro12738 Vaccinium macrocarpon HOM05D002963 ORTHO05D003302 5.1e-17 91.3 66 71.2
BraA09t36335Z Brassica rapa HOM05D002963 ORTHO05D003302 9.7e-16 87.0 55 72.7
Nitab4.5_0000466g0030 Nicotiana tabacum HOM05D002963 ORTHO05D003302 9.7e-16 87.0 48 91.7
Nitab4.5_0001785g0030 Nicotiana tabacum HOM05D002963 ORTHO05D003302 2.8e-15 85.5 45 93.3
Rhsim08G0143900 Rhododendron simsii HOM05D002963 ORTHO05D003302 2.8e-15 85.5 150 41.3
Haze_19358 Corylus avellana HOM05D002963 ORTHO05D003302 1.4e-14 83.2 93 57.0
Sabra04G0083000 Salix brachista HOM05D002963 ORTHO05D003302 6.9e-14 80.9 91 56.0
TWI79G0624 Tripterygium wilfordii HOM05D002963 ORTHO05D003302 6.9e-14 80.9 89 53.9
FAN28G1110 Fragaria x ananassa HOM05D000701 ORTHO05D003302 1.2e-13 80.1 75 57.3
Duzib187G1900 Durio zibethinus HOM05D002963 ORTHO05D003302 2.6e-13 79.0 70 60.0
ClCG02G000170 Citrullus lanatus HOM05D002963 ORTHO05D003302 7.6e-13 77.4 93 53.8
AUR62000607 Chenopodium quinoa HOM05D002963 ORTHO05D003302 2.9e-12 75.5 66 60.6
AUR62006958 Chenopodium quinoa HOM05D002963 ORTHO05D003302 2.5e-11 72.4 89 51.7
Phvul.004G132100 Phaseolus vulgaris HOM05D002963 ORTHO05D003302 1.2e-10 70.1 92 52.2
SGA_v2.0_scaffold51G18850 Striga asiatica HOM05D002963 ORTHO05D003302 7.9e-10 67.4 153 35.9
ATR0602G101 Amborella trichopoda HOM05D002963 ORTHO05D003302 1.0e-09 67.0 87 47.1
Hund07188 Selenicereus undatus HOM05D002963 ORTHO05D003302 1.8e-09 66.2 86 47.7
ECA232G3809 Erigeron canadensis HOM05D002963 ORTHO05D003302 3.0e-09 65.5 73 45.2
Ca_12727_v3 Cicer arietinum L. HOM05D002963 ORTHO05D003302 3.9e-09 65.1 64 54.7
Manes.06G159500 Manihot esculenta HOM05D002963 ORTHO05D003302 6.7e-09 64.3 54 55.6
SMO201G0107 Selaginella moellendorffii HOM05D002963 ORTHO05D003302 6.7e-09 64.3 86 40.7
GSVIVG01038712001 Vitis vinifera HOM05D002963 ORTHO05D003302 1.1e-08 63.5 54 51.9
arahy.Tifrunner.gnm1.ann1.P2ZTC5 Arachis hypogaea HOM05D002963 ORTHO05D003302 1.5e-08 63.2 71 53.5
arahy.Tifrunner.gnm1.ann1.QG5CGN Arachis hypogaea HOM05D002963 ORTHO05D003302 1.5e-08 63.2 71 53.5
Lalb_Chr22g0352161 Lupinus albus HOM05D002963 ORTHO05D003302 1.5e-08 63.2 62 54.8
MCO15G703 Micromonas commoda HOM05D002963 ORTHO05D003302 1.5e-08 63.2 81 43.2
Phvul.001G078100 Phaseolus vulgaris HOM05D002963 ORTHO05D003302 1.9e-08 62.8 62 53.2
Glyma.19G065700 Glycine max HOM05D002963 ORTHO05D003302 2.5e-08 62.4 56 55.4
Manes.14G006700 Manihot esculenta HOM05D002963 ORTHO05D003302 2.5e-08 62.4 81 48.1
Lj1g0025682 Lotus japonicus HOM05D002963 ORTHO05D003302 3.3e-08 62.0 56 53.6
MBI06_g08465_MAGBIO Magnolia biondii HOM05D002963 ORTHO05D003302 3.3e-08 62.0 65 49.2
CBR_g17698 Chara braunii HOM05D002963 ORTHO05D003302 4.3e-08 61.6 77 40.3
Ciclev10006104m.g Citrus clementina HOM05D002963 ORTHO05D003302 7.4e-08 60.8 73 46.6
TPR.G20018 Trifolium pratense HOM05D002963 ORTHO05D003302 7.4e-08 60.8 56 55.4
Dinv35323 Davidia involucrata HOM05D002963 ORTHO05D003302 1.7e-07 59.7 61 45.9
SalBow4G2345 Salvia bowleyana HOM05D002963 ORTHO05D003302 1.7e-07 59.7 62 46.8
SalBow4G2829 Salvia bowleyana HOM05D002963 ORTHO05D003302 1.7e-07 59.7 62 46.8
Os01g0219100 Oryza sativa ssp. japonica HOM05D002963 ORTHO05D003302 2.2e-07 59.3 70 42.9
TAR629G0201 Trochodendron aralioides HOM05D002963 ORTHO05D003302 2.2e-07 59.3 61 49.2
CSS0028941 Camellia sinensis var. sinensis HOM05D002963 ORTHO05D003302 3.7e-07 58.5 61 45.9
CiPaw.05G252000 Carya illinoinensis HOM05D002963 ORTHO05D003302 4.8e-07 58.2 54 50.0
HanXRQChr09g0253011 Helianthus annuus HOM05D002963 ORTHO05D003302 4.8e-07 58.2 62 46.8
Solyc03g117000.3 Solanum lycopersicum HOM05D002963 ORTHO05D003302 4.8e-07 58.2 67 46.3
Sopen03g035900 Solanum pennellii HOM05D002963 ORTHO05D003302 4.8e-07 58.2 67 46.3
Atru.chr1.151 Acer truncatum HOM05D002963 ORTHO05D003302 6.3e-07 57.8 73 50.7
MSTRG.8666 Avicennia marina HOM05D002963 ORTHO05D003302 6.3e-07 57.8 62 46.8
Cc02_g01690 Coffea canephora HOM05D002963 ORTHO05D003302 6.3e-07 57.8 61 44.3
FAN01G2740 Fragaria x ananassa HOM05D002963 ORTHO05D003302 8.2e-07 57.4 55 50.9
FAN10G3925 Fragaria x ananassa HOM05D002963 ORTHO05D003302 8.2e-07 57.4 55 50.9
Nitab4.5_0000714g0100 Nicotiana tabacum HOM05D002963 ORTHO05D003302 8.2e-07 57.4 60 45.0
Nitab4.5_0002492g0050 Nicotiana tabacum HOM05D002963 ORTHO05D003302 8.2e-07 57.4 60 45.0
Rhsim03G0207600 Rhododendron simsii HOM05D002963 ORTHO05D003302 8.2e-07 57.4 61 47.5
SGA_v2.0_scaffold44G16787 Striga asiatica HOM05D002963 ORTHO05D003302 8.2e-07 57.4 64 43.8
Sed0015989 Sechium edule HOM05D002963 ORTHO05D003302 1.1e-06 57.0 62 46.8
TWI23G0005 Tripterygium wilfordii HOM05D002963 ORTHO05D003302 1.1e-06 57.0 62 43.5
CDE02G1782 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 1.4e-06 56.6 53 47.2
ClCG05G008850 Citrullus lanatus HOM05D002963 ORTHO05D003302 1.4e-06 56.6 71 43.7
TWI14G0296 Tripterygium wilfordii HOM05D002963 ORTHO05D003302 1.4e-06 56.6 64 43.8
Zm00001eb338680 Zea mays HOM05D002963 ORTHO05D003302 1.4e-06 56.6 70 42.9
Oeu041319.1 Olea europaea HOM05D002963 ORTHO05D003302 1.8e-06 56.2 76 38.2
Migut.F00227 Erythranthe guttata HOM05D002963 ORTHO05D003302 2.4e-06 55.8 70 41.4
FvH4_7g31760 Fragaria vesca HOM05D002963 ORTHO05D003302 2.4e-06 55.8 55 49.1
FAN06G1762 Fragaria x ananassa HOM05D002963 ORTHO05D003302 2.4e-06 55.8 55 49.1
FAN06G2503 Fragaria x ananassa HOM05D002963 ORTHO05D003302 2.4e-06 55.8 55 49.1
Psat6g035800 Pisum sativum HOM05D002963 ORTHO05D003302 2.4e-06 55.8 55 54.5
Ah.02g118540 Amaranthus hybridus HOM05D002963 ORTHO05D003302 3.1e-06 55.5 50 62.0
Cfa016253 Carpinus fangiana HOM05D002963 ORTHO05D003302 3.1e-06 55.5 72 44.4
Medtr1g026920 Medicago truncatula HOM05D002963 ORTHO05D003302 5.3e-06 54.7 56 50.0
Ah.07g205850 Amaranthus hybridus HOM05D002963 ORTHO05D003302 6.9e-06 54.3 43 58.1
AT5G24170 Arabidopsis thaliana HOM05D002963 ORTHO05D003302 9.1e-06 53.9 59 49.2
CAN.G108.63 Capsicum annuum HOM05D002963 ORTHO05D003302 9.1e-06 53.9 48 52.1


User provided reference genes

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