Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 2.6e-48 194.9 88 100.0
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 2.6e-48 194.9 88 100.0
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 2.4e-46 188.3 88 96.6
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.8e-42 174.9 83 94.0
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 6.2e-42 173.7 83 92.8
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 2.2e-39 165.2 84 88.1
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 2.9e-39 164.9 85 88.2
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 1.1e-38 162.9 85 87.1
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.4e-38 162.5 87 83.9
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.9e-38 162.2 85 85.9
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.9e-38 162.2 85 85.9
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 1.9e-38 162.2 87 83.9
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.9e-38 162.2 87 83.9
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.9e-38 162.2 87 83.9
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.9e-38 162.2 87 83.9
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.9e-38 162.2 83 89.2
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 1.9e-38 162.2 83 89.2
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.4e-38 161.8 83 89.2
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 3.2e-38 161.4 83 88.0
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 3.2e-38 161.4 83 84.3
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 4.2e-38 161.0 83 85.5
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 5.4e-38 160.6 83 86.7
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 7.1e-38 160.2 83 86.7
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.3e-38 159.8 83 84.3
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.3e-38 159.8 83 84.3
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.3e-38 159.8 83 84.3
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.2e-37 159.5 83 84.3
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 1.6e-37 159.1 85 82.4
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 1.6e-37 159.1 86 81.4
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 2.1e-37 158.7 83 86.7
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 2.1e-37 158.7 86 81.4
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 2.1e-37 158.7 83 85.5
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.1e-37 158.7 83 88.0
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 2.1e-37 158.7 85 83.5
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 2.7e-37 158.3 85 81.2
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 3.5e-37 157.9 83 86.7
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.5e-37 157.9 79 89.9
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 3.5e-37 157.9 83 86.7
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 4.6e-37 157.5 85 82.4
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 6.0e-37 157.1 83 84.3
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 6.0e-37 157.1 86 80.2
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 6.0e-37 157.1 83 86.7
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 7.9e-37 156.8 83 85.5
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.8e-36 155.6 83 85.5
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 1.8e-36 155.6 85 80.0
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.8e-36 155.6 83 83.1
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 3.0e-36 154.8 86 79.1
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 3.9e-36 154.5 83 83.1
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 5.1e-36 154.1 86 81.4
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.1e-36 154.1 83 83.1
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 6.7e-36 153.7 86 77.9
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 6.7e-36 153.7 83 83.1
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 8.7e-36 153.3 83 80.7
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 1.1e-35 152.9 83 83.1
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.1e-35 152.9 86 77.9
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 1.9e-35 152.1 83 80.7
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 1.9e-35 152.1 83 84.3
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.5e-35 151.8 86 75.6
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 2.5e-35 151.8 83 78.3
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 4.3e-35 151.0 83 81.9
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 4.3e-35 151.0 86 76.7
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 5.6e-35 150.6 83 79.5
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 5.6e-35 150.6 83 81.9
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 5.6e-35 150.6 83 79.5
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 5.6e-35 150.6 86 75.6
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 7.4e-35 150.2 81 82.7
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 9.6e-35 149.8 83 78.3
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 1.6e-34 149.1 83 77.1
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 2.8e-34 148.3 83 80.7
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 3.7e-34 147.9 83 78.3
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 3.7e-34 147.9 83 78.3
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 3.7e-34 147.9 83 79.5
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 4.8e-34 147.5 83 79.5
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 8.1e-34 146.7 83 77.1
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 8.1e-34 146.7 86 76.7
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 8.1e-34 146.7 83 79.5
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.1e-33 146.4 86 76.7
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.1e-33 146.4 86 76.7
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.1e-33 146.4 86 76.7
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.1e-33 146.4 86 76.7
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 1.4e-33 146.0 83 78.3
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 1.8e-33 145.6 83 78.3
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 1.8e-33 145.6 83 78.3
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 1.8e-33 145.6 83 78.3
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 3.1e-33 144.8 83 77.1
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 3.1e-33 144.8 83 75.9
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 3.1e-33 144.8 83 78.3
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 5.3e-33 144.1 83 74.7
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 6.9e-33 143.7 83 77.1
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 9.0e-33 143.3 83 74.7
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 2.0e-32 142.1 86 75.6
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 2.6e-32 141.7 83 73.5
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 3.4e-32 141.4 83 74.7
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 1.3e-31 139.4 78 74.4
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 2.2e-31 138.7 86 69.8
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 2.9e-31 138.3 79 75.9
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.9e-31 138.3 83 73.5
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.9e-31 138.3 83 73.5
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 1.4e-30 136.0 83 74.7
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 4.2e-30 134.4 86 70.9
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 3.5e-29 131.3 86 69.8
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 3.5e-29 131.3 86 68.6
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.0e-29 130.6 83 71.1
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 1.0e-28 129.8 86 69.8
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 1.8e-28 129.0 70 80.0
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 6.7e-28 127.1 71 74.6
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 1.3e-26 122.9 87 65.5
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 2.1e-26 122.1 86 64.0
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 3.7e-26 121.3 83 65.1
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 1.2e-24 116.3 86 61.6
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.5e-22 107.5 70 70.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.5e-22 107.5 70 70.0
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.9e-20 101.3 50 84.0
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 3.3e-19 98.2 80 50.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 9.7e-19 96.7 82 50.0
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 2.2e-18 95.5 78 53.8
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 4.5e-16 87.8 80 45.0
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 4.6e-13 77.8 78 42.3
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 6.1e-13 77.4 42 73.8
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.3e-10 69.7 37 89.2
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-09 65.5 86 50.0
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 1.4e-06 56.2 36 72.2
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 2.5e-06 55.5 36 69.4


User provided reference genes

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