Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 4.9e-108 394.4 194 100.0
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.6e-101 372.1 183 99.5
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 7.5e-72 274.2 194 76.3
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.9e-68 262.3 219 67.6
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 5.2e-65 251.5 193 69.4
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 5.2e-65 251.5 193 69.4
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 3.4e-64 248.8 196 67.9
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 5.7e-64 248.1 206 64.6
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 9.8e-64 247.3 194 68.0
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 8.3e-63 244.2 193 69.4
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 5.4e-62 241.5 195 69.2
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 5.4e-62 241.5 192 67.2
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 2.0e-61 239.6 196 67.3
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 5.9e-61 238.0 205 64.4
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.2e-60 236.1 185 69.7
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 3.8e-60 235.3 186 67.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 8.5e-60 234.2 196 65.8
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.1e-59 233.8 198 67.7
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.9e-59 233.0 196 65.3
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 2.5e-59 232.6 191 67.0
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 7.2e-59 231.1 194 64.9
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 7.2e-59 231.1 197 64.0
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.6e-58 228.8 196 64.3
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 3.6e-58 228.8 190 64.2
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 4.7e-58 228.4 189 65.1
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 4.7e-58 228.4 205 62.0
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 6.1e-58 228.0 197 64.5
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 8.0e-58 227.6 202 62.4
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.4e-57 226.9 194 67.5
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 8.8e-57 224.2 188 65.4
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 1.5e-56 223.4 190 65.8
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.5e-56 223.4 188 63.8
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 4.4e-56 221.9 195 62.1
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 5.7e-56 221.5 200 61.0
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 7.5e-56 221.1 194 63.4
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 7.5e-56 221.1 206 60.7
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 9.8e-56 220.7 197 66.0
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.3e-55 220.3 187 65.8
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.7e-55 218.8 185 64.3
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 4.9e-55 218.4 191 59.7
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 4.9e-55 218.4 197 62.4
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 6.3e-55 218.0 190 64.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 8.3e-55 217.6 186 63.4
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.1e-54 217.2 190 62.6
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.4e-54 216.1 191 62.3
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 2.4e-54 216.1 209 60.3
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 2.4e-54 216.1 188 62.8
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 4.1e-54 215.3 191 63.4
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 5.4e-54 214.9 200 58.5
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 7.0e-54 214.5 188 62.2
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.2e-53 213.8 204 58.3
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.2e-53 213.8 198 59.1
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.6e-53 213.4 189 63.5
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 2.0e-53 213.0 194 60.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.7e-53 212.6 182 61.5
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 3.5e-53 212.2 200 59.5
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 3.5e-53 212.2 194 60.3
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.5e-53 212.2 187 63.6
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 7.7e-53 211.1 194 60.3
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 7.7e-53 211.1 144 77.1
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.0e-52 210.7 198 59.6
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.3e-52 210.3 194 60.3
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.7e-52 209.9 189 63.5
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.7e-52 209.9 189 63.5
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 2.3e-52 209.5 130 81.5
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 8.6e-52 207.6 205 58.0
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 8.6e-52 207.6 132 79.5
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.5e-51 206.8 186 62.4
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 2.5e-51 206.1 191 59.7
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 2.5e-51 206.1 183 63.4
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.3e-51 205.7 194 60.8
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 3.3e-51 205.7 146 70.5
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 4.3e-51 205.3 191 60.2
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 4.3e-51 205.3 189 60.3
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 4.3e-51 205.3 198 59.6
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 5.6e-51 204.9 182 60.4
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 7.3e-51 204.5 190 60.0
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 7.3e-51 204.5 188 58.0
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 9.5e-51 204.1 206 57.8
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.2e-50 203.8 190 59.5
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.6e-50 203.4 192 60.9
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.6e-50 203.4 187 57.8
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 1.6e-50 203.4 188 61.7
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.1e-50 203.0 191 60.2
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 2.1e-50 203.0 191 58.1
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 2.8e-50 202.6 189 59.8
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 3.6e-50 202.2 195 57.4
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 3.6e-50 202.2 212 56.6
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 4.7e-50 201.8 191 59.2
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 4.7e-50 201.8 259 49.4
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 6.1e-50 201.4 195 56.9
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 6.1e-50 201.4 195 56.9
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 6.1e-50 201.4 195 56.9
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 6.1e-50 201.4 241 51.5
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.4e-49 200.3 191 59.2
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 1.4e-49 200.3 192 57.3
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.8e-49 199.9 187 57.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.8e-49 199.9 203 57.6
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 1.8e-49 199.9 198 57.1
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 4.0e-49 198.7 183 62.8
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.0e-49 198.7 134 74.6
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 4.0e-49 198.7 134 74.6
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 4.0e-49 198.7 193 57.0
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 4.0e-49 198.7 193 56.5
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 6.8e-49 198.0 147 67.3
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.5e-48 196.8 268 47.4
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.6e-48 196.1 161 64.6
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.7e-47 193.4 112 84.8
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 2.2e-47 193.0 190 57.4
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 2.2e-47 193.0 193 60.6
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.9e-47 192.6 189 58.7
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 8.3e-47 191.0 158 67.7
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.2e-46 189.1 162 62.3
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 7.0e-46 188.0 141 66.7
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 9.2e-46 187.6 160 61.9
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 1.2e-45 187.2 185 55.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.6e-45 186.8 190 57.9
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 5.9e-45 184.9 172 58.7
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 5.9e-45 184.9 210 54.8
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 7.8e-45 184.5 135 67.4
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 6.6e-44 181.4 131 67.9
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.5e-43 180.3 160 62.5
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.9e-43 179.9 175 57.1
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.3e-43 178.7 163 62.0
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 5.6e-43 178.3 197 50.8
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 2.8e-42 176.0 166 60.8
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 6.2e-42 174.9 102 85.3
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 3.1e-41 172.6 125 66.4
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 6.8e-41 171.4 170 56.5
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 5.8e-40 168.3 182 48.4
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.1e-38 164.1 145 62.1
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 7.8e-37 157.9 194 49.0
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.5e-35 152.9 126 63.5
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 3.1e-33 146.0 100 73.0
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 5.2e-33 145.2 103 70.9
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.4e-32 142.5 113 64.6
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.9e-30 136.7 116 56.9
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.4e-30 136.3 119 60.5
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 3.2e-30 136.0 121 58.7
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 7.1e-30 134.8 183 47.0
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.7e-28 130.2 125 50.4
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 3.0e-28 129.4 119 57.1
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 5.1e-28 128.6 92 70.7
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.7e-23 113.6 176 42.6
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.6e-18 95.9 114 42.1
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.9e-16 87.8 74 67.6
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.6e-13 80.5 158 34.2
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 3.0e-12 76.3 44 84.1
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.9e-12 75.9 72 51.4
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 9.6e-11 71.2 87 39.1
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 6.9e-09 65.1 38 78.9
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.6e-08 63.2 35 91.4
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 1.3e-07 60.8 39 69.2


User provided reference genes

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