Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 2.7e-269 931.4 463 100.0
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.4e-246 855.9 429 98.8
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 1.0e-215 753.4 430 86.7
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 7.2e-214 747.3 429 86.0
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.2e-213 746.5 429 85.8
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 3.6e-213 745.0 430 84.4
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 8.2e-210 733.8 431 85.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.3e-207 726.5 430 83.0
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.4e-204 716.5 433 80.8
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.8e-204 716.1 430 80.7
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 3.9e-204 714.9 430 81.2
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 1.1e-203 713.4 431 79.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 3.3e-203 711.8 430 81.6
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 7.4e-203 710.7 430 80.0
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 9.7e-203 710.3 416 82.0
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.3e-202 709.9 431 81.0
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.2e-202 709.1 433 81.5
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.2e-202 709.1 430 80.9
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 4.8e-202 708.0 432 79.9
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 8.2e-202 707.2 430 79.3
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 8.2e-202 707.2 430 79.8
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.1e-201 706.8 430 79.8
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.4e-201 705.7 455 76.9
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.1e-201 704.9 432 79.2
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 5.3e-201 704.5 433 80.8
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 5.9e-200 701.0 430 78.6
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.3e-199 699.9 418 80.9
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 1.7e-199 699.5 430 78.4
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.7e-199 699.5 430 78.8
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.2e-199 699.1 430 80.7
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 2.9e-199 698.7 430 79.8
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 2.9e-199 698.7 430 80.2
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 5.0e-199 698.0 430 80.0
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 6.5e-199 697.6 456 76.5
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 8.5e-199 697.2 396 85.9
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.5e-198 696.4 434 79.3
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.9e-198 696.0 434 80.2
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 2.5e-198 695.7 431 78.4
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 2.5e-198 695.7 440 78.0
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 7.2e-198 694.1 435 77.9
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 9.4e-198 693.7 434 78.6
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.6e-197 693.0 457 74.4
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 4.7e-197 691.4 461 75.3
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 6.1e-197 691.0 458 76.4
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 6.1e-197 691.0 430 79.3
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 8.0e-197 690.6 449 75.1
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 8.0e-197 690.6 429 77.2
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 5.2e-196 688.0 427 78.2
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 8.8e-196 687.2 431 79.1
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 8.8e-196 687.2 432 78.5
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 1.1e-195 686.8 430 78.4
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.1e-195 686.8 430 79.3
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 2.0e-195 686.0 440 77.5
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 5.7e-195 684.5 435 77.0
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 9.7e-195 683.7 436 77.5
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 4.8e-194 681.4 435 76.1
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 1.1e-193 680.2 434 77.2
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.4e-193 679.9 432 76.6
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.8e-193 679.5 430 74.9
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.1e-193 678.7 428 77.6
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 4.1e-193 678.3 428 77.3
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 7.7e-192 674.1 430 78.1
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 3.8e-191 671.8 431 74.5
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 5.5e-190 667.9 436 73.2
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 5.5e-190 667.9 431 73.1
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 9.4e-190 667.2 432 75.2
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 2.7e-189 665.6 431 73.5
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 6.1e-189 664.5 430 74.7
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 3.0e-188 662.1 431 75.4
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 6.8e-188 661.0 431 73.3
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 8.8e-188 660.6 432 75.0
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.2e-187 660.2 412 78.4
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.5e-187 659.8 425 74.6
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 2.8e-186 655.6 450 70.0
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 4.8e-186 654.8 431 75.2
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 4.8e-186 654.8 430 72.3
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 8.3e-186 654.1 432 72.7
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 8.3e-186 654.1 430 74.2
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 2.7e-184 649.0 431 72.4
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 3.5e-184 648.7 411 75.4
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.0e-183 647.1 432 72.2
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.2e-183 646.0 442 70.6
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 2.2e-183 646.0 431 71.7
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 2.2e-183 646.0 440 71.1
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 2.2e-183 646.0 430 75.8
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 2.9e-183 645.6 445 73.9
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.5e-182 642.5 406 78.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 2.5e-182 642.5 481 70.5
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.2e-181 640.2 430 73.5
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 1.4e-180 636.7 451 68.5
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 3.0e-180 635.6 460 67.6
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 5.2e-180 634.8 464 71.1
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 3.7e-178 628.6 464 67.9
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.1e-177 627.1 429 71.6
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 2.1e-173 612.8 411 70.1
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 1.0e-172 610.5 412 71.1
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.0e-172 610.5 379 80.2
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.8e-169 599.7 367 75.7
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.4e-164 583.6 391 74.2
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 7.5e-163 577.8 430 68.6
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.0e-159 567.4 444 65.3
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 8.6e-159 564.3 440 65.2
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.1e-158 563.9 463 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 3.5e-152 542.3 412 62.6
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 4.6e-152 542.0 413 61.5
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 7.3e-150 534.6 413 63.0
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 3.6e-149 532.3 415 61.2
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 9.9e-147 524.2 305 83.0
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 4.6e-144 515.4 414 58.2
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 4.3e-134 482.3 454 57.9
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 2.0e-123 446.8 256 82.0
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.0e-112 408.7 430 55.3
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 9.6e-110 401.4 420 46.4
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 1.0e-103 381.3 416 47.4
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 5.0e-98 362.5 315 61.0
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.2e-96 357.8 369 54.5
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.5e-89 333.6 182 86.3
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.7e-82 310.8 456 38.2
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 6.1e-64 249.2 188 70.2
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.8e-61 240.4 358 41.1
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 9.8e-54 215.3 108 89.8
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 4.4e-46 189.9 356 38.2
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 4.9e-45 186.4 389 35.5
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.4e-44 184.1 125 76.8
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 6.0e-43 179.5 124 74.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 4.1e-36 156.8 137 60.6
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 1.6e-32 144.8 101 70.3
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.8e-23 114.8 83 67.5
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 1.1e-20 105.5 66 66.7
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.6e-19 101.7 192 31.2
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 3.5e-19 100.5 101 54.5
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 6.0e-19 99.8 111 47.7
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-18 98.2 120 50.8
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 5.1e-18 96.7 66 68.2
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 6.2e-16 89.7 56 78.6
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 6.4e-13 79.7 50 70.0
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 8.7e-10 69.3 54 63.0
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 2.5e-09 67.8 51 66.7
arahy.Tifrunner.gnm1.ann1.V8UVVM Arachis hypogaea HOM05D005577 ORTHO05D086716 7.6e-06 56.2 43 65.1
VMungo0720G2142 Vigna mungo HOM05D008589 ORTHO05D010715 9.9e-06 55.8 71 42.3


User provided reference genes

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