Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.5e-48 193.7 98 100.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.5e-31 137.5 83 85.5
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.1e-26 123.2 79 81.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.2e-23 111.7 76 73.7
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.5e-23 110.9 76 73.7
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 6.7e-21 104.0 76 65.8
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.5e-15 85.5 55 81.8
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 7.2e-15 84.0 76 50.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.2e-14 83.2 78 50.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-14 83.2 76 53.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.2e-14 83.2 76 52.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.1e-14 82.4 74 52.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.7e-14 82.0 74 54.1
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 4.7e-14 81.3 77 51.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 4.7e-14 81.3 76 50.0
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 6.1e-14 80.9 76 50.0
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 8.0e-14 80.5 78 47.4
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.0e-14 80.5 84 48.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.0e-13 80.1 76 55.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.4e-13 79.7 76 50.0
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.3e-13 79.0 76 50.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.0e-13 78.6 78 47.4
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 3.0e-13 78.6 76 50.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.0e-13 78.6 76 50.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.0e-13 78.6 74 48.6
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.0e-13 78.2 78 47.4
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.0e-13 78.2 76 52.6
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.2e-13 77.8 76 48.7
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 5.2e-13 77.8 76 51.3
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 6.8e-13 77.4 76 51.3
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 6.8e-13 77.4 76 51.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 8.8e-13 77.0 74 50.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 8.8e-13 77.0 76 47.4
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 8.8e-13 77.0 76 47.4
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 8.8e-13 77.0 76 50.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 8.8e-13 77.0 78 46.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.8e-13 77.0 70 52.9
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-12 76.6 78 47.4
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.2e-12 76.6 79 46.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-12 76.6 78 44.9
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.0e-12 75.9 76 43.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.0e-12 75.9 76 50.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-12 75.9 74 50.0
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.6e-12 75.5 76 51.3
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.6e-12 75.5 76 47.4
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.6e-12 75.5 74 50.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.6e-12 75.5 77 49.4
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.4e-12 75.1 76 47.4
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.4e-12 75.1 76 48.7
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 4.4e-12 74.7 78 48.7
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 4.4e-12 74.7 76 46.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.7e-12 74.3 76 51.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 7.5e-12 73.9 75 46.7
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 7.5e-12 73.9 76 44.7
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 9.8e-12 73.6 77 46.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.7e-11 72.8 72 47.2
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-11 72.8 76 46.1
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.7e-11 72.8 76 44.7
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.2e-11 72.4 74 48.6
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.2e-11 72.4 76 43.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.8e-11 72.0 75 44.0
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.8e-11 72.0 72 44.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.7e-11 71.6 75 45.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.8e-11 71.2 76 46.1
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.8e-11 71.2 76 47.4
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.8e-11 71.2 76 46.1
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 6.3e-11 70.9 75 46.7
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.3e-11 70.9 76 44.7
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 8.3e-11 70.5 76 44.7
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 8.3e-11 70.5 76 44.7
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.3e-11 70.5 74 45.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 8.3e-11 70.5 82 40.2
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-10 70.1 66 50.0
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-10 70.1 76 44.7
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.4e-10 69.7 77 46.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.8e-10 69.3 75 41.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-10 69.3 76 42.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-10 69.3 76 42.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.4e-10 68.9 75 44.0
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.4e-10 68.9 76 42.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.1e-10 68.6 78 41.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.1e-10 68.6 78 44.9
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.1e-10 68.6 76 43.4
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 4.1e-10 68.2 75 38.7
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 5.4e-10 67.8 76 42.1
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.4e-10 67.8 75 41.3
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 5.4e-10 67.8 76 43.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.0e-10 67.4 76 42.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.2e-09 66.6 76 42.1
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.2e-09 66.6 76 40.8
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.2e-09 66.6 76 43.4
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.2e-09 66.6 79 41.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.0e-09 65.9 76 43.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.7e-09 65.5 76 40.8
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.7e-09 65.5 76 40.8
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 3.5e-09 65.1 78 38.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.5e-09 64.7 78 37.2
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 5.9e-09 64.3 76 39.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 7.7e-09 63.9 76 42.1
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.7e-09 63.9 70 44.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 7.7e-09 63.9 74 41.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.0e-08 63.5 78 37.2
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-08 63.5 74 41.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.3e-08 63.2 76 39.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-08 63.2 76 40.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.7e-08 62.8 76 39.5
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-08 62.8 74 40.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.7e-08 62.8 76 40.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.2e-08 62.4 78 35.9
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.2e-08 62.4 78 35.9
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.2e-08 62.4 78 35.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.2e-08 62.4 76 43.4
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-08 62.4 74 40.5
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.2e-08 62.4 76 36.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.9e-08 62.0 78 34.6
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.9e-08 62.0 76 39.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.8e-08 61.6 74 43.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.0e-08 61.2 84 36.9
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 5.0e-08 61.2 76 39.5
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.0e-08 61.2 76 36.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.0e-08 61.2 76 39.5
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 6.5e-08 60.8 125 32.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 6.5e-08 60.8 76 36.8
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.5e-08 60.8 76 36.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 6.5e-08 60.8 59 45.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.5e-08 60.5 76 39.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-07 60.1 80 41.2
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.5e-07 59.7 63 44.4
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-07 59.7 76 40.8
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-07 59.7 74 41.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-07 59.7 77 40.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.5e-07 58.9 76 40.8
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.2e-07 58.5 78 33.3
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.2e-07 58.5 75 37.3
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 4.2e-07 58.2 78 33.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.2e-07 58.2 47 57.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.5e-07 57.8 76 39.5
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 5.5e-07 57.8 76 35.5
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.5e-07 57.8 76 35.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 7.2e-07 57.4 76 38.2
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 7.2e-07 57.4 76 34.2
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 7.2e-07 57.4 76 34.2
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.2e-06 56.6 78 33.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-06 56.2 68 38.2
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.6e-06 56.2 76 35.5
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.1e-06 55.8 63 41.3
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.6e-06 55.1 69 39.1
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.1e-06 54.3 70 35.7


User provided reference genes

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