Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g039780.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.6e-32 140.6 69 100.0
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 1.1e-20 102.8 66 77.3
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 6.9e-20 100.1 66 77.3
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 1.2e-19 99.4 66 75.8
CAN.G745.36 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
Peaxi162Scf00058g00822 Petunia axillaris HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
Peaxi162Scf00163g00089 Petunia axillaris HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
PGSC0003DMG400015064 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
PGSC0003DMG400020533 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
PGSC0003DMG400046719 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
PGSC0003DMG402024143 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.4 66 75.8
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 5.8e-19 97.1 66 74.2
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 5.8e-19 97.1 66 74.2
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 5.8e-19 97.1 66 74.2
CAN.G1875.2 Capsicum annuum HOM05D000445 ORTHO05D000314 7.6e-19 96.7 66 74.2
CAN.G547.16 Capsicum annuum HOM05D000445 ORTHO05D000314 7.6e-19 96.7 66 74.2
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 9.9e-19 96.3 66 74.2
Nitab4.5_0011099g0040 Nicotiana tabacum HOM05D000445 ORTHO05D036881 1.7e-18 95.5 66 72.7
DCAR_031999 Daucus carota HOM05D000445 ORTHO05D000314 2.2e-18 95.1 66 72.7
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 2.2e-18 95.1 66 72.7
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 2.2e-18 95.1 66 72.7
BNapus_Darmor_BZH_scaffold_287p00320 Brassica napus HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
C06p23170 Brassica napus HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
BolSC47t61071H Brassica oleracea HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
BolSC49t61212H Brassica oleracea HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
BraSC25t45894Z Brassica rapa HOM05D000445 ORTHO05D000314 2.9e-18 94.7 66 72.7
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.8e-18 94.4 68 73.5
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.8e-18 94.4 68 73.5
Hma1.2p1_1244F.1_g270040 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.8e-18 94.4 68 73.5
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.8e-18 94.4 68 73.5
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 4.9e-18 94.0 66 72.7
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 4.9e-18 94.0 66 72.7
Solyc08g029410.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-18 94.0 66 72.7
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr00c0434g0574671 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr00c0533g0575541 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr00c0572g0575981 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr00c0634g0576591 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr13g0416591 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQChr17g0569651 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.4e-18 93.6 66 72.7
Nitab4.5_0004920g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.4e-18 93.2 66 69.7
Nitab4.5_0000223g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-17 92.8 66 72.7
Nitab4.5_0001946g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-17 92.8 60 78.3
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 71.2
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 71.2
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 71.2
Solyc00g500239.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 71.2
Solyc00g500304.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 71.2
Solyc11g063577.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 71.2
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 72.7
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 72.7
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.4e-17 92.4 66 72.7
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.4e-17 91.7 66 69.7
BolSC29t60492H Brassica oleracea HOM05D000445 ORTHO05D000314 3.2e-17 91.3 64 71.9
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.2e-17 91.3 66 69.7
Nn031s41601 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.2e-17 91.3 66 69.7
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.2e-17 91.3 66 69.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.2e-17 91.3 66 69.7
arahy.Tifrunner.gnm1.ann1.SV0IPA Arachis hypogaea HOM05D000445 ORTHO05D000314 5.4e-17 90.5 66 69.7
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 5.4e-17 90.5 66 69.7
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 5.4e-17 90.5 66 69.7
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 5.4e-17 90.5 66 69.7
Nitab4.5_0000779g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.4e-17 90.5 64 71.9
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 7.1e-17 90.1 66 69.7
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 7.1e-17 90.1 66 69.7
Lalb_Chr12g0206621 Lupinus albus HOM05D000445 ORTHO05D000314 7.1e-17 90.1 66 69.7
Peaxi162Scf00603g00013 Petunia axillaris HOM05D000445 ORTHO05D000314 7.1e-17 90.1 66 71.2
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 7.1e-17 90.1 66 69.7
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 7.1e-17 90.1 66 69.7
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 9.3e-17 89.7 62 74.2
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.2e-16 89.4 66 66.7
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 2.7e-16 88.2 66 68.2
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 2.7e-16 88.2 66 68.2
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 2.7e-16 88.2 58 77.6
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 69.7
Lsat_1_v5_gn_3_104600 Lactuca sativa HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 69.7
Lsat_1_v5_gn_4_147941 Lactuca sativa HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 69.7
Lsat_1_v5_gn_7_920 Lactuca sativa HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 69.7
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 69.7
Lsat_1_v5_gn_9_18681 Lactuca sativa HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 69.7
Lalb_Chr13g0292661 Lupinus albus HOM05D000445 ORTHO05D000314 3.5e-16 87.8 66 68.2
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
Ah.10g028580 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
Ah.10g028850 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 65.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 66.7
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 66.7
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 4.6e-16 87.4 66 66.7
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 3.0e-15 84.7 66 68.2
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 3.0e-15 84.7 66 66.7
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 3.0e-15 84.7 66 66.7
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 5.1e-15 84.0 67 68.7
AUR62032991 Chenopodium quinoa HOM05D000445 ORTHO05D000314 6.6e-15 83.6 66 63.6
Sed0004640 Sechium edule HOM05D000445 ORTHO05D000314 6.6e-15 83.6 66 68.2
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 6.6e-15 83.6 66 68.2
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 6.6e-15 83.6 66 68.2
Ah.08g222970 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.7e-15 83.2 66 62.1
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 8.7e-15 83.2 66 66.7
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.1e-14 82.8 66 62.1
Nitab4.5_0010831g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.3e-14 81.3 56 71.4
HanXRQChr00c0585g0576211 Helianthus annuus HOM05D000445 ORTHO05D000314 4.3e-14 80.9 64 65.6
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.1e-13 78.6 54 77.8
FAN08G2610 Fragaria x ananassa HOM05D000445 ORTHO05D000314 2.1e-13 78.6 66 62.1
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-13 78.6 58 69.0
Gohir.D02G117422 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.8e-13 77.4 51 76.5
RcHm_v2.0_Chr2g0102151 Rosa chinensis HOM05D000445 ORTHO05D000314 8.1e-13 76.6 66 62.1
Glyma.16G065300 Glycine max HOM05D000445 ORTHO05D000314 1.1e-12 76.3 67 64.2
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 4.0e-12 74.3 55 74.5
EL10As12g24038 Beta vulgaris HOM05D000445 ORTHO05D000314 5.3e-12 73.9 66 60.6
EL10As15g24112 Beta vulgaris HOM05D000445 ORTHO05D000314 5.3e-12 73.9 66 59.1
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 5.3e-12 73.9 66 59.1
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 5.3e-12 73.9 66 62.1
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 5.3e-12 73.9 66 62.1
Solyc11g062050.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-11 71.6 44 81.8
Lalb_Chr06g0166291 Lupinus albus HOM05D000445 ORTHO05D000314 7.6e-11 70.1 51 70.6
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-10 68.2 61 59.0
HanXRQChr00c0593g0576451 Helianthus annuus HOM05D000445 ORTHO05D000314 3.2e-09 64.7 47 72.3
Potri.019G028400 Populus trichocarpa HOM05D000445 ORTHO05D000314 3.2e-09 64.7 66 56.1
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 4.2e-09 64.3 72 59.7
AL9U12050 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 9.3e-09 63.2 34 88.2
Migut.D01375 Erythranthe guttata HOM05D000445 ORTHO05D000314 9.3e-09 63.2 34 88.2
Phvul.007G139100 Phaseolus vulgaris HOM05D000445 ORTHO05D000314 9.3e-09 63.2 69 55.1
MELO3C027250.2 Cucumis melo HOM05D000445 ORTHO05D000314 1.2e-08 62.8 66 56.1
Gohir.D12G199050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.2e-08 62.8 66 54.5
Gorai.008G214200 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.2e-08 62.8 66 54.5
Oeu048725.1 Olea europaea HOM05D000445 ORTHO05D000314 1.6e-08 62.4 40 75.0
Solyc07g021110.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-08 62.4 51 60.8
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.1e-08 62.0 66 54.5
Aqoxy3G01863 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.1e-08 62.0 66 54.5
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 2.1e-08 62.0 44 72.7
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 4.6e-08 60.8 46 65.2
BraSC143t45644Z Brassica rapa HOM05D000445 ORTHO05D000314 6.0e-08 60.5 31 90.3
Gorai.009G345600 Gossypium raimondii HOM05D000445 ORTHO05D000314 6.0e-08 60.5 34 82.4
Nitab4.5_0008348g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.9e-08 60.1 37 78.4
arahy.Tifrunner.gnm1.ann1.9T9XDL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.3e-07 59.3 35 82.9
Gohir.D05G322050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.3e-07 59.3 34 82.4
AUR62041554 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.8e-07 58.9 45 64.4
HanXRQChr13g0413621 Helianthus annuus HOM05D000445 ORTHO05D000314 3.0e-07 58.2 51 64.7
Nitab4.5_0004929g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.9e-07 57.8 40 72.5
Solyc10g019010.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-06 55.1 42 66.7
Solyc01g017145.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-06 54.7 41 63.4


User provided reference genes

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