Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g039705.1 Solanum lycopersicum HOM05D010076 ORTHO05D012500 5.2e-69 264.2 132 100.0
Solyc10g049777.1 Solanum lycopersicum HOM05D010076 ORTHO05D012500 2.6e-52 208.8 122 82.0
Sopen04g016090 Solanum pennellii HOM05D010076 ORTHO05D012500 3.9e-48 194.9 102 95.1
PGSC0003DMG400014039 Solanum tuberosum HOM05D010076 ORTHO05D012500 4.5e-44 181.4 117 75.2
Sopen10g021640 Solanum pennellii HOM05D010076 ORTHO05D012500 3.1e-37 158.7 102 80.4
Sopen10g020620 Solanum pennellii HOM05D000691 ORTHO05D000378 5.0e-35 151.4 89 80.9
Sopen10g021670 Solanum pennellii HOM05D010076 ORTHO05D012500 1.1e-34 150.2 96 76.0
Sopen10g021610 Solanum pennellii HOM05D010076 ORTHO05D012500 1.1e-31 140.2 86 80.2
Sopen04g016780 Solanum pennellii HOM05D010076 ORTHO05D012500 5.7e-31 137.9 79 86.1
Sopen10g021530 Solanum pennellii HOM05D010076 ORTHO05D012500 1.3e-30 136.7 88 76.1
CAN.G1510.1 Capsicum annuum HOM05D010076 ORTHO05D012500 2.8e-30 135.6 97 64.9
Sopen10g021730 Solanum pennellii HOM05D010076 ORTHO05D012500 3.7e-30 135.2 86 77.9
Sopen10g021760 Solanum pennellii HOM05D010076 ORTHO05D012500 6.3e-30 134.4 86 79.1
Solyc01g057903.1 Solanum lycopersicum HOM05D010076 ORTHO05D012500 3.1e-29 132.1 87 73.6
Sopen10g021950 Solanum pennellii HOM05D010076 ORTHO05D012500 6.9e-29 131.0 86 77.9
Sopen10g021500 Solanum pennellii HOM05D010076 ORTHO05D012500 1.2e-28 130.2 86 77.9
Sopen10g021540 Solanum pennellii HOM05D010076 ORTHO05D012500 1.5e-28 129.8 86 76.7
Sopen10g021860 Solanum pennellii HOM05D010076 ORTHO05D012500 2.0e-28 129.4 86 77.9
Sopen10g021880 Solanum pennellii HOM05D010076 ORTHO05D012500 3.8e-27 125.2 86 73.3
CAN.G327.4 Capsicum annuum HOM05D010076 ORTHO05D012500 3.2e-26 122.1 93 59.1
Sopen04g010650 Solanum pennellii HOM05D010076 ORTHO05D009932 6.1e-25 117.9 85 68.2
Manes.15G191830 Manihot esculenta HOM05D000107 ORTHO05D000062 6.1e-17 91.3 117 45.3
SHI42354 Sapria himalayana HOM05D000107 ORTHO05D000062 8.8e-16 87.4 125 40.0
Manes.04G058760 Manihot esculenta HOM05D000107 ORTHO05D000062 1.1e-15 87.0 117 42.7
SHI31941 Sapria himalayana HOM05D000107 ORTHO05D000062 1.1e-15 87.0 134 41.0
SHI36114 Sapria himalayana HOM05D000107 ORTHO05D000062 4.4e-15 85.1 126 40.5
SHI37531 Sapria himalayana HOM05D000107 ORTHO05D000062 5.7e-15 84.7 118 43.2
Manes.16G074801 Manihot esculenta HOM05D000107 ORTHO05D000062 2.2e-14 82.8 117 41.0
Manes.17G119950 Manihot esculenta HOM05D000107 ORTHO05D000062 2.2e-14 82.8 107 38.3
SHI49792 Sapria himalayana HOM05D000107 ORTHO05D000062 1.1e-13 80.5 119 45.4
SHI41918 Sapria himalayana HOM05D000107 ORTHO05D000062 4.1e-13 78.6 104 41.3
Sopen11g015700 Solanum pennellii HOM05D000004 ORTHO05D000002 4.1e-13 78.6 110 40.9
Manes.10G068101 Manihot esculenta HOM05D000107 ORTHO05D000062 9.1e-13 77.4 107 36.4
SHI07609 Sapria himalayana HOM05D000107 ORTHO05D000062 2.9e-11 72.4 119 42.9
SHI51771 Sapria himalayana HOM05D000107 ORTHO05D000062 2.9e-11 72.4 104 40.4
BcaB02g11280 Brassica carinata HOM05D008266 ORTHO05D000062 5.0e-11 71.6 117 35.0
ECA246G4894 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.0e-11 71.6 110 38.2
Sopen07g016930 Solanum pennellii HOM05D010076 ORTHO05D012500 1.5e-10 70.1 89 41.6
TPR.G11453 Trifolium pratense HOM05D000107 ORTHO05D000062 1.9e-10 69.7 81 40.7
CAN.G195.18 Capsicum annuum HOM05D010219 ORTHO05D012838 3.2e-10 68.9 105 38.1
SHI09783 Sapria himalayana HOM05D013063 ORTHO05D017109 3.2e-10 68.9 117 35.9
SHI45688 Sapria himalayana HOM05D000107 ORTHO05D000062 3.2e-10 68.9 73 47.9
COL.COLO4_28982 Corchorus olitorius HOM05D009620 ORTHO05D013057 5.5e-10 68.2 77 44.2
COL.COLO4_36518 Corchorus olitorius HOM05D008266 ORTHO05D000062 7.2e-10 67.8 99 38.4
BcaC06g36414 Brassica carinata HOM05D008266 ORTHO05D000062 9.4e-10 67.4 71 47.9
SHI13501 Sapria himalayana HOM05D000107 ORTHO05D000062 1.2e-09 67.0 59 50.8
THA.LOC104810147 Tarenaya hassleriana HOM05D008266 ORTHO05D000062 1.2e-09 67.0 90 40.0
BcaB03g16140 Brassica carinata HOM05D008266 ORTHO05D000062 1.6e-09 66.6 80 45.0
SHI38875 Sapria himalayana HOM05D016089 ORTHO05D012500 1.6e-09 66.6 85 42.4
BcaC08g44714 Brassica carinata HOM05D008266 ORTHO05D021591 2.1e-09 66.2 109 34.9
SHI19809 Sapria himalayana HOM05D000107 ORTHO05D000062 2.1e-09 66.2 61 44.3
BcaC03g18089 Brassica carinata HOM05D008266 ORTHO05D000062 3.6e-09 65.5 121 33.9
THA.LOC104798989 Tarenaya hassleriana HOM05D008266 ORTHO05D000062 3.6e-09 65.5 116 38.8
BcaB02g10137 Brassica carinata HOM05D008266 ORTHO05D000062 4.7e-09 65.1 113 33.6
COL.COLO4_22692 Corchorus olitorius HOM05D025240 ORTHO05D019037 4.7e-09 65.1 98 38.8
BcaB02g11130 Brassica carinata HOM05D008266 ORTHO05D000062 6.1e-09 64.7 52 50.0
COL.COLO4_16326 Corchorus olitorius HOM05D000107 ORTHO05D000062 6.1e-09 64.7 104 34.6
PGSC0003DMG400003456 Solanum tuberosum HOM05D007844 ORTHO05D000062 6.1e-09 64.7 87 37.9
THA.LOC104810640 Tarenaya hassleriana HOM05D000107 ORTHO05D000062 8.0e-09 64.3 50 48.0
BcaC05g26938 Brassica carinata HOM05D008266 ORTHO05D009904 1.0e-08 63.9 111 34.2
BcaC06g34574 Brassica carinata HOM05D008266 ORTHO05D000062 1.0e-08 63.9 101 37.6
COL.COLO4_33324 Corchorus olitorius HOM05D000107 ORTHO05D000062 1.0e-08 63.9 77 40.3
THA.LOC104825104 Tarenaya hassleriana HOM05D000107 ORTHO05D000062 1.0e-08 63.9 116 38.8
BcaB01g02847 Brassica carinata HOM05D008266 ORTHO05D000062 1.4e-08 63.5 124 32.3
ECA234G0534 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.4e-08 63.5 104 34.6
THA.LOC104815415 Tarenaya hassleriana HOM05D000107 ORTHO05D000062 1.4e-08 63.5 107 33.6
COL.COLO4_23532 Corchorus olitorius HOM05D000107 ORTHO05D000062 1.8e-08 63.2 87 41.4
COL.COLO4_24208 Corchorus olitorius HOM05D016401 ORTHO05D009534 1.8e-08 63.2 87 41.4
SHI31600 Sapria himalayana HOM05D000107 ORTHO05D000062 1.8e-08 63.2 58 43.1
Ca_19138_v3 Cicer arietinum L. HOM05D008273 ORTHO05D000110 3.0e-08 62.4 95 33.7
COL.COLO4_37631 Corchorus olitorius HOM05D000107 ORTHO05D000062 3.0e-08 62.4 121 34.7
COL.COLO4_24438 Corchorus olitorius HOM05D000107 ORTHO05D000062 4.0e-08 62.0 104 33.7
COL.COLO4_04723 Corchorus olitorius HOM05D000107 ORTHO05D000062 5.2e-08 61.6 104 33.7
Ah.14g081230 Amaranthus hybridus HOM05D000107 ORTHO05D000062 8.8e-08 60.8 49 55.1
BcaC08g44331 Brassica carinata HOM05D008266 ORTHO05D000062 8.8e-08 60.8 113 33.6
TWI32G1089 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 8.8e-08 60.8 117 31.6
TWI38G0895 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 8.8e-08 60.8 117 31.6
THA.LOC104810224 Tarenaya hassleriana HOM05D008266 ORTHO05D000062 1.2e-07 60.5 73 39.7
Ca_26934_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000110 1.5e-07 60.1 58 41.4
COL.COLO4_29949 Corchorus olitorius HOM05D000107 ORTHO05D000062 1.5e-07 60.1 104 32.7
TWI60G0864 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.5e-07 60.1 122 30.3
COL.COLO4_28468 Corchorus olitorius HOM05D000107 ORTHO05D000062 2.0e-07 59.7 104 34.6
COL.COLO4_35592 Corchorus olitorius HOM05D000107 ORTHO05D010911 2.0e-07 59.7 56 42.9
Ah.14g081250 Amaranthus hybridus HOM05D000107 ORTHO05D000062 2.6e-07 59.3 49 55.1
BcaNung02471 Brassica carinata HOM05D008266 ORTHO05D000062 2.6e-07 59.3 103 35.9
COL.COLO4_33931 Corchorus olitorius HOM05D000107 ORTHO05D000062 2.6e-07 59.3 104 33.7
TPR.G532 Trifolium pratense HOM05D000107 ORTHO05D000062 2.6e-07 59.3 102 35.3
TWI18G0474 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 2.6e-07 59.3 96 35.4
BcaC08g47042 Brassica carinata HOM05D008266 ORTHO05D000062 3.3e-07 58.9 108 37.0
COL.COLO4_36911 Corchorus olitorius HOM05D000107 ORTHO05D000062 3.3e-07 58.9 104 32.7
TWI53G0600 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 3.3e-07 58.9 107 30.8
BcaB06g26682 Brassica carinata HOM05D008266 ORTHO05D000062 4.4e-07 58.5 53 47.2
PGSC0003DMG400032278 Solanum tuberosum HOM05D000107 ORTHO05D017132 4.4e-07 58.5 90 37.8
BcaC01g03173 Brassica carinata HOM05D008266 ORTHO05D000062 5.7e-07 58.2 85 35.3
TPR.G39680 Trifolium pratense HOM05D000107 ORTHO05D000062 5.7e-07 58.2 116 31.9
TWI81G0480 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 5.7e-07 58.2 84 34.5
TWI81G0027 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.5e-07 57.8 125 29.6
Ca_13668_v3 Cicer arietinum L. HOM05D008273 ORTHO05D000062 9.7e-07 57.4 95 33.7
TWI73G0119 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 9.7e-07 57.4 93 35.5
BcaB04g17841 Brassica carinata HOM05D008266 ORTHO05D000062 1.3e-06 57.0 53 45.3
COL.COLO4_07238 Corchorus olitorius HOM05D000107 ORTHO05D000062 1.3e-06 57.0 104 30.8
TPR.G18363 Trifolium pratense HOM05D000107 ORTHO05D000062 1.3e-06 57.0 76 38.2
TPR.G20799 Trifolium pratense HOM05D000107 ORTHO05D000062 1.3e-06 57.0 116 33.6
Solyc01g018015.1 Solanum lycopersicum HOM05D010076 ORTHO05D012500 1.7e-06 56.6 32 81.2
BolC3t18806H Brassica oleracea HOM05D008266 ORTHO05D000062 2.2e-06 56.2 53 43.4
BolC7t42130H Brassica oleracea HOM05D008266 ORTHO05D000062 2.2e-06 56.2 109 31.2
BolC4t22507H Brassica oleracea HOM05D001086 ORTHO05D009904 2.8e-06 55.8 55 38.2
TPR.G14753 Trifolium pratense HOM05D000107 ORTHO05D000062 3.7e-06 55.5 87 32.2
TPR.G14757 Trifolium pratense HOM05D000107 ORTHO05D000062 4.8e-06 55.1 106 30.2
BcaC03g17092 Brassica carinata HOM05D008266 ORTHO05D000062 6.3e-06 54.7 124 32.3
BolC2t10248H Brassica oleracea HOM05D008266 ORTHO05D000062 6.3e-06 54.7 115 32.2
Ca_02618_v3 Cicer arietinum L. HOM05D008273 ORTHO05D000110 6.3e-06 54.7 86 32.6
Ca_12327_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 6.3e-06 54.7 60 38.3
BolC2t08050H Brassica oleracea HOM05D008266 ORTHO05D000062 8.2e-06 54.3 109 30.3
BolC3t20058H Brassica oleracea HOM05D008266 ORTHO05D000062 8.2e-06 54.3 112 30.4
Ca_02478_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000110 8.2e-06 54.3 91 30.8
COL.COLO4_06019 Corchorus olitorius HOM05D000107 ORTHO05D000062 8.2e-06 54.3 117 33.3
ECA247G3969 Erigeron canadensis HOM05D000107 ORTHO05D000062 8.2e-06 54.3 104 33.7


User provided reference genes

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