Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 2.8e-52 208.4 107 100.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.8e-26 120.9 68 91.2
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.0e-22 108.6 60 91.7
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 4.3e-21 104.8 58 89.7
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 7.4e-21 104.0 57 91.2
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.6e-20 102.8 57 91.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.6e-20 102.8 57 89.5
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.6e-20 102.8 57 89.5
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.1e-20 102.4 57 89.5
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.1e-20 102.4 58 87.9
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.7e-20 101.7 79 74.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.8e-20 101.3 57 87.7
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.8e-20 101.3 57 87.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.8e-20 101.3 57 87.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 4.8e-20 101.3 57 87.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 6.2e-20 100.9 57 89.5
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 6.2e-20 100.9 60 86.7
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 8.1e-20 100.5 57 87.7
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 8.1e-20 100.5 57 87.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.1e-19 100.1 57 87.7
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.1e-19 100.1 57 89.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.1e-19 100.1 57 89.5
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.1e-19 100.1 57 87.7
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.4e-19 99.8 57 86.0
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.4e-19 99.8 57 86.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-19 99.8 57 86.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.4e-19 99.8 57 87.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.4e-19 99.8 57 89.5
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 3.1e-19 98.6 57 86.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 3.1e-19 98.6 57 86.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 6.9e-19 97.4 56 85.7
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 6.9e-19 97.4 57 84.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 6.9e-19 97.4 52 92.3
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.2e-18 96.7 57 86.0
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.2e-18 96.7 57 84.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.5e-18 96.3 54 85.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.5e-18 96.3 52 90.4
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.0e-18 95.9 57 86.0
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.0e-18 95.9 52 90.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 2.6e-18 95.5 55 85.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.5e-18 94.7 57 82.5
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 4.5e-18 94.7 67 71.6
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 4.5e-18 94.7 57 84.2
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 4.5e-18 94.7 77 70.1
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.5e-18 94.7 55 83.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.8e-18 94.4 55 83.6
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 7.6e-18 94.0 54 87.0
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 9.9e-18 93.6 57 82.5
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 9.9e-18 93.6 57 80.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 9.9e-18 93.6 55 81.8
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.3e-17 93.2 55 83.6
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.3e-17 93.2 79 67.1
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.7e-17 92.8 57 80.7
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.2e-17 92.4 54 83.3
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.9e-17 92.0 59 78.0
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.9e-17 92.0 53 84.9
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.9e-17 92.0 57 78.9
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.9e-17 92.0 55 81.8
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 4.9e-17 91.3 75 70.7
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 4.9e-17 91.3 75 69.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 6.4e-17 90.9 79 68.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 8.4e-17 90.5 54 79.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.4e-17 90.5 55 81.8
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.4e-16 89.7 55 81.8
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.4e-16 89.7 55 80.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.4e-16 89.7 74 70.3
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.9e-16 89.4 58 77.6
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.9e-16 89.4 54 79.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-16 89.0 57 78.9
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-16 89.0 57 78.9
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.4e-16 89.0 73 67.1
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.4e-16 89.0 73 67.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.2e-16 88.6 58 81.0
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 4.2e-16 88.2 50 86.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 4.2e-16 88.2 46 91.3
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.6e-15 86.3 53 81.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.1e-15 85.9 56 75.0
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.7e-15 85.5 52 82.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.5e-15 85.1 57 73.7
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.0e-15 84.3 49 77.6
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.0e-15 84.3 49 77.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 6.0e-15 84.3 56 75.0
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 7.9e-15 84.0 56 73.2
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.3e-14 83.2 50 80.0
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.8e-14 82.8 56 73.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-14 82.4 52 76.9
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.0e-14 82.0 41 95.1
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.5e-13 79.7 44 88.6
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.6e-13 77.8 82 56.1
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.4e-13 77.4 50 76.0
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.6e-12 76.3 57 70.2
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.6e-12 76.3 50 76.0
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.8e-12 75.5 42 83.3
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.8e-12 74.7 42 78.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.8e-11 72.8 36 94.4
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.0e-10 69.3 50 68.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.0e-10 69.3 50 68.0
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.0e-10 69.3 50 68.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 2.0e-10 69.3 50 68.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.0e-10 69.3 50 68.0
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.0e-10 69.3 50 68.0
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.4e-10 68.6 50 68.0
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.4e-10 68.6 50 68.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 3.4e-10 68.6 50 68.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.4e-10 68.6 52 63.5
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.4e-10 68.6 52 63.5
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-10 67.8 50 68.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 5.8e-10 67.8 49 67.3
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 5.8e-10 67.8 49 67.3
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 5.8e-10 67.8 50 66.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.3e-09 66.6 50 66.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.5e-09 64.3 52 63.5
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.6e-07 59.7 54 55.6
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.0e-07 57.8 45 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 7.9e-07 57.4 42 59.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 7.9e-07 57.4 42 64.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.0e-06 57.0 54 53.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-06 56.6 42 64.3
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.0e-06 55.5 50 54.0


User provided reference genes

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