Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 0.0e+00 1158.7 584 100.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 0.0e+00 1145.2 584 99.0
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 7.5e-301 1036.6 587 90.3
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 5.8e-277 957.2 590 84.2
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 6.8e-262 907.1 591 76.8
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 2.6e-261 905.2 591 77.0
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 5.8e-261 904.0 592 77.0
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.3e-260 902.9 590 80.3
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.1e-259 899.8 591 76.0
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.6e-258 896.0 587 76.5
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 2.3e-257 892.1 580 76.9
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 1.9e-256 889.0 579 76.5
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.2e-255 886.3 539 79.4
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 1.2e-255 886.3 538 80.7
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 2.1e-255 885.6 549 80.0
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 3.6e-255 884.8 590 75.8
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.1e-254 881.7 539 79.0
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 5.2e-254 880.9 538 80.5
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 5.2e-254 880.9 538 81.0
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 6.8e-254 880.6 588 75.2
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 6.8e-254 880.6 625 72.5
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.2e-253 879.8 583 76.5
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.5e-253 879.4 594 73.4
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 2.6e-253 878.6 592 74.3
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 4.4e-253 877.9 592 74.3
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 7.6e-253 877.1 589 75.7
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 9.9e-253 876.7 591 74.8
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 1.3e-252 876.3 590 74.7
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 1.7e-252 875.9 592 74.8
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 2.2e-252 875.5 539 80.5
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 2.9e-252 875.2 590 74.6
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 3.8e-252 874.8 538 79.7
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 4.9e-252 874.4 546 78.9
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 4.9e-252 874.4 546 78.8
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 8.4e-252 873.6 544 78.9
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.4e-251 872.1 590 73.9
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 7.1e-251 870.5 591 73.8
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 7.1e-251 870.5 547 77.5
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 1.3e-249 866.3 594 72.2
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.7e-249 865.9 602 72.8
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 1.7e-249 865.9 544 77.4
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 3.9e-249 864.8 589 73.7
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.5e-248 862.8 591 74.5
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 4.3e-248 861.3 526 80.2
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 4.3e-248 861.3 593 72.7
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.3e-248 861.3 522 79.9
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 6.2e-247 857.4 592 73.5
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.4e-246 856.3 595 73.6
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 1.4e-246 856.3 539 77.6
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 3.1e-246 855.1 538 77.7
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 5.3e-246 854.4 586 74.2
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 9.0e-246 853.6 570 73.3
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 1.2e-245 853.2 538 77.1
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.6e-245 850.5 593 71.8
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 9.9e-245 850.1 604 72.2
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 9.9e-245 850.1 522 80.7
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.3e-244 849.7 593 72.2
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 3.8e-244 848.2 596 72.0
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 3.8e-244 848.2 594 71.9
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 3.8e-244 848.2 538 77.0
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 6.4e-244 847.4 535 77.6
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 8.4e-244 847.0 594 71.9
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 8.4e-244 847.0 598 71.9
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 8.4e-244 847.0 586 73.5
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 8.4e-244 847.0 557 75.6
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.4e-243 846.3 594 71.7
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 1.4e-243 846.3 538 76.8
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.5e-242 841.6 584 74.0
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.8e-242 840.5 619 69.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.3e-241 839.7 539 76.3
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 8.7e-241 837.0 538 75.1
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.1e-240 836.6 593 72.5
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 1.9e-240 835.9 595 71.6
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 4.3e-240 834.7 539 76.3
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 4.3e-240 834.7 539 76.3
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 7.3e-240 833.9 532 76.7
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 4.8e-239 831.2 545 76.3
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 6.2e-239 830.9 593 72.2
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 8.1e-239 830.5 588 71.8
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.4e-235 819.7 527 76.5
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.1e-233 811.2 628 67.0
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.3e-228 796.6 535 74.0
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.4e-227 793.1 523 75.7
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 7.9e-226 787.3 544 74.4
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 5.1e-225 784.6 516 76.6
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 2.8e-223 778.9 538 73.0
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 4.0e-222 775.0 523 73.8
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 9.0e-222 773.9 522 73.9
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.2e-220 769.2 539 72.5
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.9e-219 766.1 547 70.9
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 2.5e-219 765.8 499 77.6
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 3.2e-219 765.4 551 70.2
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 2.5e-216 755.7 461 78.7
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 2.6e-213 745.7 445 82.2
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 5.0e-212 741.5 563 69.1
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 5.0e-212 741.5 466 76.4
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 1.4e-211 740.0 467 76.7
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 3.2e-211 738.8 521 70.8
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 5.1e-209 731.5 439 85.2
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 1.0e-204 717.2 561 67.4
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 2.1e-202 709.5 444 78.8
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.4e-201 706.8 493 72.4
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.1e-201 704.9 494 71.1
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 1.1e-195 687.2 506 67.6
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 1.4e-193 680.2 547 65.1
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.0e-188 664.1 505 65.7
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 1.0e-188 664.1 523 65.4
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.2e-178 630.6 517 62.7
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.6e-165 587.0 447 65.8
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 4.0e-161 572.4 387 73.9
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.5e-123 446.8 324 65.7
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-92 343.2 253 67.6
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.0e-87 326.2 200 77.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-63 247.7 274 47.8
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 3.2e-62 243.8 144 87.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-53 214.9 206 52.9
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.5e-51 208.4 141 70.9
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 7.0e-41 172.9 100 77.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 4.4e-35 153.7 100 73.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.2e-32 145.6 101 68.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.3e-26 125.6 106 62.3
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.0e-23 115.9 66 78.8
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.0e-23 115.9 181 40.9
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.1e-22 112.5 74 75.7
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.2e-19 102.4 72 69.4
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.4e-17 95.5 68 67.6
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.4e-17 95.5 68 67.6
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 2.4e-17 94.7 73 61.6
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.6e-16 92.0 68 66.2
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 6.0e-16 90.1 67 65.7
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 6.0e-16 90.1 67 65.7
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 4.8e-13 80.5 54 68.5
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 5.6e-06 57.0 38 68.4


User provided reference genes

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