Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g025120.2 Solanum lycopersicum HOM05D003292 ORTHO05D037436 1.8e-20 101.7 52 100.0
Nitab4.5_0007148g0070 Nicotiana tabacum HOM05D003292 ORTHO05D004237 2.0e-19 98.2 52 96.2
Sopen04g011540 Solanum pennellii HOM05D000006 ORTHO05D000001 1.1e-17 92.4 47 97.9
CAN.G476.2 Capsicum annuum HOM05D003292 ORTHO05D004237 1.2e-16 89.0 47 95.7
Lj5g0020782 Lotus japonicus HOM05D003292 ORTHO05D004237 5.9e-16 86.7 47 85.1
CSS0007603 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 1.0e-15 85.9 47 89.4
Peaxi162Scf00431g00110 Petunia axillaris HOM05D003292 ORTHO05D004237 1.0e-15 85.9 47 93.6
Lalb_Chr06g0170371 Lupinus albus HOM05D003292 ORTHO05D004237 1.3e-15 85.5 47 87.2
HanXRQChr14g0456221 Helianthus annuus HOM05D003292 ORTHO05D004237 2.2e-15 84.7 47 85.1
Phvul.007G096800 Phaseolus vulgaris HOM05D003292 ORTHO05D004237 2.2e-15 84.7 47 83.0
Sc06g0001710 Simmondsia chinensis HOM05D003292 ORTHO05D004237 2.2e-15 84.7 47 87.2
VMungo0720G0781 Vigna mungo HOM05D003292 ORTHO05D004237 2.2e-15 84.7 47 83.0
Hma1.2p1_1458F.1_g284800 Hydrangea macrophylla HOM05D003292 ORTHO05D004237 2.9e-15 84.3 45 88.9
MSTRG.27476 Avicennia marina HOM05D003292 ORTHO05D004237 3.8e-15 84.0 47 85.1
ECA238G4082 Erigeron canadensis HOM05D003292 ORTHO05D004237 3.8e-15 84.0 47 83.0
Manes.07G096900 Manihot esculenta HOM05D003292 ORTHO05D004237 3.8e-15 84.0 47 85.1
arahy.Tifrunner.gnm1.ann1.PCB8SU Arachis hypogaea HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 83.0
arahy.Tifrunner.gnm1.ann1.V0NN3N Arachis hypogaea HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 83.0
Cc02_g11130 Coffea canephora HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 85.1
Glyma.20G181300 Glycine max HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 78.7
Medtr1g094680 Medicago truncatula HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 83.0
Potri.008G037100 Populus trichocarpa HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 85.1
Sabra08G0025000 Salix brachista HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 85.1
Sabra10G0174000 Salix brachista HOM05D003292 ORTHO05D004237 5.0e-15 83.6 47 83.0
Lj2A17G38 Lonicera japonica HOM05D003292 ORTHO05D004237 6.5e-15 83.2 47 85.1
Ca_10553_v3 Cicer arietinum L. HOM05D003292 ORTHO05D004237 8.5e-15 82.8 45 84.4
Eucgr.G02857 Eucalyptus grandis HOM05D003292 ORTHO05D004237 8.5e-15 82.8 47 83.0
Glyma.10G209300 Glycine max HOM05D003292 ORTHO05D004237 8.5e-15 82.8 47 80.9
Manes.07G095828 Manihot esculenta HOM05D003292 ORTHO05D004237 1.1e-14 82.4 47 83.0
Potri.010G225100 Populus trichocarpa HOM05D003292 ORTHO05D004237 1.1e-14 82.4 47 83.0
vmacro04854 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 1.1e-14 82.4 47 83.0
Manes.07G095808 Manihot esculenta HOM05D003292 ORTHO05D004237 1.5e-14 82.0 47 83.0
QL08p055153 Quercus lobata HOM05D003292 ORTHO05D004237 1.5e-14 82.0 46 84.8
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.5e-14 82.0 47 83.0
CiPaw.01G270600 Carya illinoinensis HOM05D003292 ORTHO05D004237 2.5e-14 81.3 47 83.0
ClCG05G021130 Citrullus lanatus HOM05D003292 ORTHO05D004237 2.5e-14 81.3 47 78.7
MELO3C012414.2 Cucumis melo HOM05D003292 ORTHO05D004237 2.5e-14 81.3 47 78.7
CsaV3_5G036130 Cucumis sativus L. HOM05D003292 ORTHO05D004237 2.5e-14 81.3 47 78.7
Rhsim02G0095100 Rhododendron simsii HOM05D003292 ORTHO05D004237 2.5e-14 81.3 47 80.9
Rhsim09G0149700 Rhododendron simsii HOM05D003292 ORTHO05D004237 2.5e-14 81.3 47 80.9
COL.COLO4_38472 Corchorus olitorius HOM05D003292 ORTHO05D004237 3.2e-14 80.9 47 78.7
Atru.chr12.818 Acer truncatum HOM05D003292 ORTHO05D004237 4.2e-14 80.5 47 83.0
CSS0003969 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 4.2e-14 80.5 47 80.9
DCAR_006429 Daucus carota HOM05D003292 ORTHO05D004237 4.2e-14 80.5 49 73.5
Nitab4.5_0002194g0030 Nicotiana tabacum HOM05D003292 ORTHO05D004237 4.2e-14 80.5 43 95.3
TPR.G1911 Trifolium pratense HOM05D003292 ORTHO05D004237 4.2e-14 80.5 47 78.7
Actinidia06753 Actinidia chinensis HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 80.9
CANSAT56G2535 Cannabis sativa HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 80.9
CDE06G2226 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 76.6
Migut.D01651 Erythranthe guttata HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 80.9
Migut.F01967 Erythranthe guttata HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 80.9
Os02g0745000 Oryza sativa ssp. japonica HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 80.9
PSO063G0716 Papaver somniferum HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 83.0
PSO339G5193 Papaver somniferum HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 83.0
PGR142G1202 Punica granatum HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 78.7
TWI38G0463 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 5.5e-14 80.1 47 76.6
Aqoxy1G01184 Aquilegia oxysepala HOM05D003292 ORTHO05D004237 7.2e-14 79.7 47 80.9
CiPaw.02G172900 Carya illinoinensis HOM05D003292 ORTHO05D004237 7.2e-14 79.7 47 80.9
AUR62043812 Chenopodium quinoa HOM05D003292 ORTHO05D004237 7.2e-14 79.7 47 78.7
Gohir.D10G212500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 7.2e-14 79.7 47 78.7
Gorai.011G238300 Gossypium raimondii HOM05D003292 ORTHO05D004237 7.2e-14 79.7 47 78.7
Duzib128G0335 Durio zibethinus HOM05D003292 ORTHO05D004237 9.4e-14 79.3 47 78.7
Gohir.A05G295200 Gossypium hirsutum HOM05D003292 ORTHO05D004237 9.4e-14 79.3 47 78.7
Gorai.009G312500 Gossypium raimondii HOM05D003292 ORTHO05D004237 9.4e-14 79.3 47 78.7
Sed0016709 Sechium edule HOM05D003292 ORTHO05D004237 9.4e-14 79.3 47 76.6
Thecc.10G078500 Theobroma cacao HOM05D003292 ORTHO05D004237 9.4e-14 79.3 47 80.9
Cpa.g.sc53.98 Carica papaya HOM05D003292 ORTHO05D004237 1.2e-13 79.0 47 80.9
Dinv32702 Davidia involucrata HOM05D003292 ORTHO05D004237 1.6e-13 78.6 47 76.6
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 2.1e-13 78.2 46 80.4
CSS0026427 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 2.1e-13 78.2 47 76.6
CSS0026599 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 2.1e-13 78.2 47 76.6
Nn2g11538 Nelumbo nucifera HOM05D003292 ORTHO05D004237 2.1e-13 78.2 47 78.7
Thecc.10G077400 Theobroma cacao HOM05D003292 ORTHO05D037436 2.1e-13 78.2 46 78.3
ATR0680G328 Amborella trichopoda HOM05D003292 ORTHO05D004237 2.7e-13 77.8 47 78.7
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.7e-13 77.8 47 76.6
ECA238G1658 Erigeron canadensis HOM05D003292 ORTHO05D004237 2.7e-13 77.8 47 74.5
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 76.6
FAN10G0369 Fragaria x ananassa HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 76.6
Gohir.D05G295900 Gossypium hirsutum HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 76.6
Lsat_1_v5_gn_2_99761 Lactuca sativa HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 74.5
Oeu007406.1 Olea europaea HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 78.7
TAR633G2338 Trochodendron aralioides HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 78.7
GSVIVG01025229001 Vitis vinifera HOM05D003292 ORTHO05D004237 3.6e-13 77.4 47 76.6
Aa31LG3G2920 Aethionema arabicum HOM05D003292 ORTHO05D004237 4.7e-13 77.0 47 78.7
EL10Ac6g14147 Beta vulgaris HOM05D003292 ORTHO05D004237 6.1e-13 76.6 47 78.7
Actinidia22439 Actinidia chinensis HOM05D003292 ORTHO05D004237 8.0e-13 76.3 47 78.7
MD01G1105500 Malus domestica HOM05D003292 ORTHO05D004237 8.0e-13 76.3 47 76.6
FvH4_7g18990 Fragaria vesca HOM05D003292 ORTHO05D004237 1.0e-12 75.9 47 74.5
FAN03G0674 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.0e-12 75.9 47 74.5
FAN06G1207 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.0e-12 75.9 47 74.5
unitig_46.g18600 Utricularia gibba HOM05D003292 ORTHO05D004237 1.0e-12 75.9 47 78.7
HPP92_013048 Vanilla planifolia HOM05D003292 ORTHO05D004237 1.0e-12 75.9 47 76.6
Actinidia24123 Actinidia chinensis HOM05D003292 ORTHO05D004237 1.4e-12 75.5 47 74.5
THA.LOC104799512 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 1.4e-12 75.5 47 70.2
BcaB04g21216 Brassica carinata HOM05D003292 ORTHO05D004237 1.8e-12 75.1 47 76.6
BcaB04g21217 Brassica carinata HOM05D003292 ORTHO05D004237 1.8e-12 75.1 47 76.6
BcaC09g48102 Brassica carinata HOM05D003292 ORTHO05D004237 1.8e-12 75.1 47 76.6
A01p41910 Brassica napus HOM05D003292 ORTHO05D004237 1.8e-12 75.1 47 76.6
BolC1t05407H Brassica oleracea HOM05D003292 ORTHO05D004237 1.8e-12 75.1 47 76.6
BraA01t04260Z Brassica rapa HOM05D003292 ORTHO05D004237 1.8e-12 75.1 47 76.6
DCAR_006075 Daucus carota HOM05D003292 ORTHO05D004237 1.8e-12 75.1 49 69.4
Prupe.2G211000 Prunus persica HOM05D003292 ORTHO05D004237 2.3e-12 74.7 47 74.5
THA.LOC104823204 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 2.3e-12 74.7 47 72.3
AL3G21680 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 74.5
AT3G10350 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 74.5
Carub.0003s0953 Capsella rubella HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 74.5
CAN.G1358.5 Capsicum annuum HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 74.5
HanXRQChr14g0452611 Helianthus annuus HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 72.3
Nitab4.5_0004479g0080 Nicotiana tabacum HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 76.6
RcHm_v2.0_Chr1g0362921 Rosa chinensis HOM05D003292 ORTHO05D004237 3.0e-12 74.3 47 74.5
BcaC05g29475 Brassica carinata HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 74.5
A05p38800 Brassica napus HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 74.5
C05p57830 Brassica napus HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 74.5
BolC5t34438H Brassica oleracea HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 74.5
BraA05t22671Z Brassica rapa HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 74.5
Cpa.g.sc65.13 Carica papaya HOM05D003292 ORTHO05D004237 4.0e-12 73.9 51 64.7
Sp3g08620 Schrenkiella parvula HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 74.5
vmacro03221 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 4.0e-12 73.9 47 72.3
Thhalv10020822m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 5.2e-12 73.6 47 74.5
Gohir.D05G105800 Gossypium hirsutum HOM05D003292 ORTHO05D004237 6.8e-12 73.2 47 68.1
Gorai.009G109800 Gossypium raimondii HOM05D003292 ORTHO05D004237 6.8e-12 73.2 47 68.1
MD07G1171700 Malus domestica HOM05D003292 ORTHO05D004237 6.8e-12 73.2 43 81.4
Peaxi162Scf00115g01224 Petunia axillaris HOM05D003292 ORTHO05D004237 6.8e-12 73.2 47 72.3
SGA_v2.0_scaffold180G39620 Striga asiatica HOM05D003292 ORTHO05D004237 6.8e-12 73.2 47 70.2
Atru.chr3.3588 Acer truncatum HOM05D003292 ORTHO05D004237 8.8e-12 72.8 47 70.2
COL.COLO4_18292 Corchorus olitorius HOM05D003292 ORTHO05D004237 8.8e-12 72.8 47 70.2
FAN06G4609 Fragaria x ananassa HOM05D003292 ORTHO05D004237 8.8e-12 72.8 47 72.3
CDE02G4294 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.5e-11 72.0 47 70.2
Gohir.A05G105750 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.5e-11 72.0 47 66.0
TWI79G1368 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 1.5e-11 72.0 47 66.0
Migut.D02251 Erythranthe guttata HOM05D003292 ORTHO05D004237 2.0e-11 71.6 47 68.1
MBI18_g21586_MAGBIO Magnolia biondii HOM05D003292 ORTHO05D004237 2.0e-11 71.6 47 70.2
Ciclev10028528m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.6e-11 71.2 47 68.1
Duzib168G0106 Durio zibethinus HOM05D003292 ORTHO05D004237 2.6e-11 71.2 45 64.4
AL8G37320 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 9.8e-11 69.3 47 63.8
AT5G60730 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 9.8e-11 69.3 47 63.8
Thhalv10013776m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 9.8e-11 69.3 47 63.8
Solyc11g069830.2 Solanum lycopersicum HOM05D003292 ORTHO05D004237 9.8e-11 69.3 47 68.1
Sopen11g028450 Solanum pennellii HOM05D003292 ORTHO05D004237 1.3e-10 68.9 47 68.1
PGSC0003DMG400008075 Solanum tuberosum HOM05D003292 ORTHO05D004237 1.3e-10 68.9 47 68.1
Oeu056299.2 Olea europaea HOM05D003292 ORTHO05D004237 2.8e-10 67.8 47 66.0
Sp6g22310 Schrenkiella parvula HOM05D003292 ORTHO05D004237 3.7e-10 67.4 47 61.7
BcaC03g13941 Brassica carinata HOM05D003292 ORTHO05D004237 4.8e-10 67.0 47 61.7
BNapus_Darmor_BZH_scaffold_38p00140 Brassica napus HOM05D003292 ORTHO05D004237 4.8e-10 67.0 47 61.7
BolC2t07224H Brassica oleracea HOM05D003292 ORTHO05D004237 4.8e-10 67.0 47 61.7
Eucgr.J00904 Eucalyptus grandis HOM05D003292 ORTHO05D004237 4.8e-10 67.0 47 63.8
Pp3c22_13860 Physcomitrium patens HOM05D003292 ORTHO05D004237 4.8e-10 67.0 47 59.6
Lj3g0021738 Lotus japonicus HOM05D003292 ORTHO05D004237 6.3e-10 66.6 47 63.8
SMO143G0002 Selaginella moellendorffii HOM05D003292 ORTHO05D004237 6.3e-10 66.6 47 63.8
CBR_g19921 Chara braunii HOM05D003292 ORTHO05D004237 8.3e-10 66.2 47 61.7
arahy.Tifrunner.gnm1.ann1.B3ZHWF Arachis hypogaea HOM05D003292 ORTHO05D004237 1.1e-09 65.9 47 63.8
arahy.Tifrunner.gnm1.ann1.869HPH Arachis hypogaea HOM05D003292 ORTHO05D004237 1.4e-09 65.5 47 61.7
TPR.G6163 Trifolium pratense HOM05D003292 ORTHO05D004237 1.8e-09 65.1 47 63.8
Aa31LG1G12690 Aethionema arabicum HOM05D003292 ORTHO05D004237 3.1e-09 64.3 47 59.6
C02p11500 Brassica napus HOM05D003292 ORTHO05D004237 3.1e-09 64.3 47 57.4
Carub.0008s2141 Capsella rubella HOM05D003292 ORTHO05D004237 3.1e-09 64.3 47 59.6
Medtr4g058005 Medicago truncatula HOM05D003292 ORTHO05D004237 4.1e-09 63.9 47 63.8
Psat7g144400 Pisum sativum HOM05D003292 ORTHO05D004237 4.1e-09 63.9 47 59.6
Nitab4.5_0004126g0040 Nicotiana tabacum HOM05D003292 ORTHO05D004237 5.4e-09 63.5 43 69.8
CARHR274410 Cardamine hirsuta HOM05D003292 ORTHO05D004237 7.0e-09 63.2 47 59.6
Mapoly0037s0120 Marchantia polymorpha HOM05D003292 ORTHO05D004237 7.0e-09 63.2 47 57.4
Pp3c19_12470 Physcomitrium patens HOM05D003292 ORTHO05D004237 7.0e-09 63.2 47 55.3
QL08p024183 Quercus lobata HOM05D003292 ORTHO05D037436 9.1e-09 62.8 46 67.4
Nitab4.5_0004797g0010 Nicotiana tabacum HOM05D003292 ORTHO05D004237 1.2e-08 62.4 43 67.4
Cc01_g10790 Coffea canephora HOM05D003292 ORTHO05D004237 1.6e-08 62.0 51 54.9
Lalb_Chr01g0004461 Lupinus albus HOM05D003292 ORTHO05D004237 1.6e-08 62.0 47 59.6
Thecc.10G078000 Theobroma cacao HOM05D003292 ORTHO05D410035 1.6e-08 62.0 43 72.1
PGR119G0151 Punica granatum HOM05D003292 ORTHO05D004237 2.7e-08 61.2 47 57.4
Cre05.g245158 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 4.5e-08 60.5 46 58.7
Cre24.g755097 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 4.5e-08 60.5 46 58.7
Zm00001eb080780 Zea mays HOM05D003292 ORTHO05D004237 5.0e-07 57.0 47 55.3
BcaB05g22666 Brassica carinata HOM05D003292 ORTHO05D004237 1.1e-06 55.8 41 63.4
MCO10G054 Micromonas commoda HOM05D003292 ORTHO05D004237 1.9e-06 55.1 46 54.3


User provided reference genes

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