Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g024600.1 Solanum lycopersicum HOM05D000966 ORTHO05D007323 2.3e-78 295.4 142 100.0
Solyc07g008580.3 Solanum lycopersicum HOM05D000966 ORTHO05D007323 1.0e-25 120.6 65 81.5
Sopen07g004520 Solanum pennellii HOM05D000966 ORTHO05D007323 1.0e-25 120.6 65 81.5
PGSC0003DMG400022981 Solanum tuberosum HOM05D000966 ORTHO05D007323 5.0e-25 118.2 65 80.0
CAN.G192.13 Capsicum annuum HOM05D000966 ORTHO05D007323 9.8e-21 104.0 67 68.7
Nitab4.5_0000065g0220 Nicotiana tabacum HOM05D000966 ORTHO05D007323 1.4e-19 100.1 83 55.4
Cc03_g13120 Coffea canephora HOM05D000966 ORTHO05D007323 1.8e-19 99.8 65 66.2
Nitab4.5_0000617g0300 Nicotiana tabacum HOM05D000966 ORTHO05D007323 2.4e-19 99.4 64 68.8
Nitab4.5_0000949g0070 Nicotiana tabacum HOM05D000966 ORTHO05D007323 2.4e-19 99.4 64 68.8
Cc03_g11990 Coffea canephora HOM05D000966 ORTHO05D007323 5.4e-19 98.2 64 67.2
PGSC0003DMG400010972 Solanum tuberosum HOM05D000966 ORTHO05D007323 5.4e-19 98.2 64 67.2
Oeu020493.1 Olea europaea HOM05D000966 ORTHO05D007323 9.1e-19 97.4 65 64.6
CAN.G555.11 Capsicum annuum HOM05D000966 ORTHO05D007323 1.2e-18 97.1 65 64.6
Cc03_g12010 Coffea canephora HOM05D000966 ORTHO05D007323 1.2e-18 97.1 66 65.2
Peaxi162Scf00088g00919 Petunia axillaris HOM05D000966 ORTHO05D007323 1.2e-18 97.1 64 68.8
Solyc07g008460.3 Solanum lycopersicum HOM05D000966 ORTHO05D007323 2.0e-18 96.3 64 65.6
Sopen07g004390 Solanum pennellii HOM05D000966 ORTHO05D007323 2.7e-18 95.9 64 65.6
MSTRG.22010 Avicennia marina HOM05D000966 ORTHO05D007323 4.5e-18 95.1 65 63.1
Oeu056130.2 Olea europaea HOM05D000966 ORTHO05D007323 7.7e-18 94.4 65 61.5
Sc20g0003630 Simmondsia chinensis HOM05D000966 ORTHO05D007323 7.7e-18 94.4 65 61.5
PGSC0003DMG400022994 Solanum tuberosum HOM05D000966 ORTHO05D007323 7.7e-18 94.4 65 61.5
SalBow6G0098 Salvia bowleyana HOM05D000966 ORTHO05D007323 1.0e-17 94.0 64 64.1
Migut.N03097 Erythranthe guttata HOM05D000966 ORTHO05D007323 1.3e-17 93.6 65 61.5
Lj4C702T3 Lonicera japonica HOM05D000966 ORTHO05D007323 1.3e-17 93.6 65 61.5
HanXRQChr08g0226091 Helianthus annuus HOM05D000966 ORTHO05D007323 1.7e-17 93.2 65 61.5
Medtr1g098370 Medicago truncatula HOM05D000966 ORTHO05D007323 2.3e-17 92.8 65 60.0
DCAR_001155 Daucus carota HOM05D000966 ORTHO05D007323 2.9e-17 92.4 66 60.6
CiPaw.15G013800 Carya illinoinensis HOM05D000966 ORTHO05D007323 3.8e-17 92.0 66 60.6
ECA233G6088 Erigeron canadensis HOM05D000966 ORTHO05D007323 3.8e-17 92.0 66 59.1
Hma1.2p1_0081F.1_g042500 Hydrangea macrophylla HOM05D000966 ORTHO05D007323 5.0e-17 91.7 65 61.5
GSVIVG01034572001 Vitis vinifera HOM05D000966 ORTHO05D007323 5.0e-17 91.7 67 56.7
Gohir.A06G111200 Gossypium hirsutum HOM05D000966 ORTHO05D007323 6.5e-17 91.3 66 59.1
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 6.5e-17 91.3 65 61.5
Medtr1g098000 Medicago truncatula HOM05D000966 ORTHO05D007323 8.6e-17 90.9 65 58.5
Solyc09g059997.1 Solanum lycopersicum HOM05D000966 ORTHO05D007323 8.6e-17 90.9 63 61.9
vmacro17763 Vaccinium macrocarpon HOM05D000966 ORTHO05D007323 8.6e-17 90.9 69 56.5
Zm00001eb082920 Zea mays HOM05D000966 ORTHO05D007323 8.6e-17 90.9 65 60.0
Gohir.D06G115100 Gossypium hirsutum HOM05D000966 ORTHO05D007323 1.1e-16 90.5 65 60.0
Gorai.010G131600 Gossypium raimondii HOM05D000966 ORTHO05D007323 1.1e-16 90.5 65 60.0
Nn3g18699 Nelumbo nucifera HOM05D000966 ORTHO05D007323 1.5e-16 90.1 65 61.5
PSO700G0340 Papaver somniferum HOM05D000966 ORTHO05D007323 1.5e-16 90.1 65 60.0
CANSAT25G2301 Cannabis sativa HOM05D000966 ORTHO05D007323 1.9e-16 89.7 65 60.0
Cfa018294 Carpinus fangiana HOM05D000966 ORTHO05D007323 1.9e-16 89.7 65 60.0
Haze_17793 Corylus avellana HOM05D000966 ORTHO05D007323 1.9e-16 89.7 65 60.0
Lsat_1_v5_gn_8_521 Lactuca sativa HOM05D000966 ORTHO05D007323 1.9e-16 89.7 65 60.0
Potri.005G195400 Populus trichocarpa HOM05D000966 ORTHO05D007323 1.9e-16 89.7 65 60.0
Sabra05G0148900 Salix brachista HOM05D000966 ORTHO05D007323 2.5e-16 89.4 65 60.0
Ca_10671_v3 Cicer arietinum L. HOM05D000966 ORTHO05D007323 3.3e-16 89.0 65 58.5
Glyma.20G168900 Glycine max HOM05D000966 ORTHO05D007323 4.2e-16 88.6 65 58.5
Glyma.10G222800 Glycine max HOM05D000966 ORTHO05D007323 5.5e-16 88.2 65 58.5
Os04g0429100 Oryza sativa ssp. japonica HOM05D000966 ORTHO05D007323 5.5e-16 88.2 65 56.9
Rhsim06G0128000 Rhododendron simsii HOM05D000966 ORTHO05D007323 5.5e-16 88.2 65 58.5
TPR.G17050 Trifolium pratense HOM05D000966 ORTHO05D007323 5.5e-16 88.2 65 58.5
VMungo0720G0673 Vigna mungo HOM05D000966 ORTHO05D007323 5.5e-16 88.2 65 58.5
arahy.Tifrunner.gnm1.ann1.Z2GQ5K Arachis hypogaea HOM05D000966 ORTHO05D007323 7.2e-16 87.8 65 58.5
Lj5g0028132 Lotus japonicus HOM05D000966 ORTHO05D007323 7.2e-16 87.8 65 58.5
Lalb_Chr02g0141501 Lupinus albus HOM05D000966 ORTHO05D007323 7.2e-16 87.8 65 58.5
Phvul.007G082400 Phaseolus vulgaris HOM05D000966 ORTHO05D007323 7.2e-16 87.8 65 56.9
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-16 87.8 65 60.0
Thecc.08G157600 Theobroma cacao HOM05D000966 ORTHO05D007323 7.2e-16 87.8 65 58.5
AUR62026672 Chenopodium quinoa HOM05D000966 ORTHO05D007323 9.5e-16 87.4 64 60.9
AUR62040579 Chenopodium quinoa HOM05D000966 ORTHO05D007323 9.5e-16 87.4 64 60.9
Duzib116G0132 Durio zibethinus HOM05D000966 ORTHO05D007323 9.5e-16 87.4 65 58.5
Psat6g191160 Pisum sativum HOM05D000966 ORTHO05D007323 9.5e-16 87.4 65 56.9
THA.LOC104812030 Tarenaya hassleriana HOM05D000966 ORTHO05D007323 9.5e-16 87.4 65 60.0
Actinidia17776 Actinidia chinensis HOM05D000966 ORTHO05D007323 1.2e-15 87.0 66 57.6
COL.COLO4_13799 Corchorus olitorius HOM05D000966 ORTHO05D007323 1.2e-15 87.0 65 58.5
Eucgr.F02689 Eucalyptus grandis HOM05D000966 ORTHO05D007323 1.2e-15 87.0 65 58.5
Ah.02g124940 Amaranthus hybridus HOM05D000966 ORTHO05D007323 2.1e-15 86.3 64 59.4
arahy.Tifrunner.gnm1.ann1.83HUSC Arachis hypogaea HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 56.9
MELO3C008329.2 Cucumis melo HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 56.9
CsaV3_6G005070 Cucumis sativus L. HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 56.9
MD05G1031300 Malus domestica HOM05D000966 ORTHO05D007323 2.1e-15 86.3 67 56.7
Sed0009464 Sechium edule HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 56.9
Hund26681 Selenicereus undatus HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 58.5
TAR381G1161 Trochodendron aralioides HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 60.0
GSVIVG01034571001 Vitis vinifera HOM05D000966 ORTHO05D007323 2.1e-15 86.3 65 56.9
Atru.chr13.2052 Acer truncatum HOM05D000966 ORTHO05D007323 2.8e-15 85.9 65 58.5
PSO170G0768 Papaver somniferum HOM05D000966 ORTHO05D007323 2.8e-15 85.9 65 56.9
Cpa.g.sc49.86 Carica papaya HOM05D000966 ORTHO05D007323 4.7e-15 85.1 65 56.9
PGR042G2706 Punica granatum HOM05D000966 ORTHO05D007323 4.7e-15 85.1 65 56.9
ATR0584G286 Amborella trichopoda HOM05D000966 ORTHO05D007323 6.1e-15 84.7 64 59.4
Aqoxy4G02511 Aquilegia oxysepala HOM05D000966 ORTHO05D007323 6.1e-15 84.7 64 59.4
CSS0040268 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D007323 8.0e-15 84.3 65 56.9
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 8.0e-15 84.3 65 56.9
Manes.12G141700 Manihot esculenta HOM05D000966 ORTHO05D007323 8.0e-15 84.3 65 55.4
CARHR070260 Cardamine hirsuta HOM05D000966 ORTHO05D007323 1.0e-14 84.0 65 56.9
CDE12G0409 Ceratophyllum demersum HOM05D000966 ORTHO05D007323 1.0e-14 84.0 102 44.1
TWI34G1291 Tripterygium wilfordii HOM05D000966 ORTHO05D007323 1.4e-14 83.6 65 55.4
Ciclev10000952m.g Citrus clementina HOM05D000966 ORTHO05D007323 1.8e-14 83.2 61 59.0
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 2.3e-14 82.8 65 55.4
Sp5g31860 Schrenkiella parvula HOM05D000966 ORTHO05D007323 2.3e-14 82.8 65 56.9
PGSC0003DMG400035778 Solanum tuberosum HOM05D000966 ORTHO05D007323 2.3e-14 82.8 64 57.8
AL2G36860 Arabidopsis lyrata HOM05D000966 ORTHO05D007323 3.0e-14 82.4 65 56.9
AT1G76710 Arabidopsis thaliana HOM05D000966 ORTHO05D007323 3.0e-14 82.4 65 56.9
Aa31LG4G6790 Aethionema arabicum HOM05D000966 ORTHO05D007323 4.0e-14 82.0 156 34.0
Carub.0002s2362 Capsella rubella HOM05D000966 ORTHO05D007323 4.0e-14 82.0 65 56.9
Thhalv10018466m.g Eutrema salsugineum HOM05D000966 ORTHO05D007323 4.0e-14 82.0 65 56.9
RcHm_v2.0_Chr1g0329481 Rosa chinensis HOM05D000593 ORTHO05D000562 4.0e-14 82.0 65 55.4
BcaC08g47221 Brassica carinata HOM05D000966 ORTHO05D007323 1.5e-13 80.1 65 53.8
A07p42360 Brassica napus HOM05D001345 ORTHO05D001190 1.5e-13 80.1 65 53.8
A07p42380 Brassica napus HOM05D000966 ORTHO05D007323 1.5e-13 80.1 65 53.8
C06p50930 Brassica napus HOM05D000966 ORTHO05D007323 1.5e-13 80.1 65 53.8
BolC6t40119H Brassica oleracea HOM05D000966 ORTHO05D007323 1.5e-13 80.1 65 53.8
BraA07t31764Z Brassica rapa HOM05D000966 ORTHO05D007323 1.5e-13 80.1 65 53.8
SEGI_26212 Sequoiadendron giganteum HOM05D000966 ORTHO05D007323 1.5e-13 80.1 95 46.3
PGSC0003DMG400010980 Solanum tuberosum HOM05D000966 ORTHO05D007323 1.5e-13 80.1 65 56.9
CBR_g12731 Chara braunii HOM05D000966 ORTHO05D007323 1.3e-12 77.0 66 51.5
ClCG08G008820 Citrullus lanatus HOM05D000966 ORTHO05D007323 1.7e-12 76.6 62 54.8
Peaxi162Scf01038g00145 Petunia axillaris HOM05D000966 ORTHO05D007323 2.2e-12 76.3 55 63.6
Mapoly0036s0043 Marchantia polymorpha HOM05D000966 ORTHO05D007323 1.4e-11 73.6 66 45.5
Cre09.g392542 Chlamydomonas reinhardtii HOM05D000966 ORTHO05D004359 1.2e-07 60.5 67 38.8
TWI32G0919 Tripterygium wilfordii HOM05D000966 ORTHO05D002384 1.6e-07 60.1 63 42.9
Mapoly0045s0061 Marchantia polymorpha HOM05D000966 ORTHO05D002384 6.1e-07 58.2 54 46.3
Os02g0554000 Oryza sativa ssp. japonica HOM05D000966 ORTHO05D004359 1.0e-06 57.4 54 46.3
Aqoxy5G02416 Aquilegia oxysepala HOM05D000966 ORTHO05D004359 1.8e-06 56.6 54 40.7
ECA246G3937 Erigeron canadensis HOM05D000966 ORTHO05D004359 1.8e-06 56.6 54 42.6
Zm00001eb309540 Zea mays HOM05D000966 ORTHO05D002384 1.8e-06 56.6 53 49.1
CBR_g50033 Chara braunii HOM05D000966 ORTHO05D002384 2.3e-06 56.2 60 46.7
QL09p032394 Quercus lobata HOM05D000966 ORTHO05D004359 2.3e-06 56.2 54 42.6
Lsat_1_v5_gn_6_110300 Lactuca sativa HOM05D000966 ORTHO05D004359 4.0e-06 55.5 55 38.2
SMO196G0091 Selaginella moellendorffii HOM05D000966 ORTHO05D004359 4.0e-06 55.5 54 40.7
HPP92_016112 Vanilla planifolia HOM05D000966 ORTHO05D004359 4.0e-06 55.5 54 40.7
Ah.05g169110 Amaranthus hybridus HOM05D000966 ORTHO05D004359 5.2e-06 55.1 54 42.6
Cc10_g13740 Coffea canephora HOM05D000966 ORTHO05D004359 5.2e-06 55.1 54 40.7
HanXRQChr05g0149781 Helianthus annuus HOM05D000966 ORTHO05D004359 5.2e-06 55.1 54 38.9
Rhsim06G0088400 Rhododendron simsii HOM05D000966 ORTHO05D004359 5.2e-06 55.1 64 37.5
EL10Ac1g01359 Beta vulgaris HOM05D000966 ORTHO05D004359 6.8e-06 54.7 54 44.4
CSS0026263 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 6.8e-06 54.7 54 40.7
Migut.N03259 Erythranthe guttata HOM05D000966 ORTHO05D004359 6.8e-06 54.7 54 40.7
Lj1g0026196 Lotus japonicus HOM05D000966 ORTHO05D004359 6.8e-06 54.7 54 42.6
Zm00001eb243610 Zea mays HOM05D000966 ORTHO05D004359 6.8e-06 54.7 54 46.3
Actinidia15211 Actinidia chinensis HOM05D000966 ORTHO05D004359 8.9e-06 54.3 54 38.9
CSS0042459 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 8.9e-06 54.3 54 38.9
Dinv27269 Davidia involucrata HOM05D000966 ORTHO05D004359 8.9e-06 54.3 54 38.9
Hma1.2p1_0880F.1_g231805 Hydrangea macrophylla HOM05D000966 ORTHO05D004359 8.9e-06 54.3 54 38.9
Potri.005G182100 Populus trichocarpa HOM05D000966 ORTHO05D004359 8.9e-06 54.3 54 40.7
TAR381G1211 Trochodendron aralioides HOM05D000966 ORTHO05D004359 8.9e-06 54.3 54 38.9


User provided reference genes

Program Settings