Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.5e-225 784.3 392 100.0
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 3.3e-220 768.1 392 98.2
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.3e-203 713.0 394 91.6
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 1.0e-165 587.0 408 76.0
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.7e-137 492.7 407 66.6
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.9e-133 478.0 393 67.7
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 9.9e-132 474.2 407 66.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.0e-64 251.5 442 41.6
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.2e-63 248.1 430 42.6
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.7e-60 236.9 440 39.8
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.6e-57 227.6 427 38.4
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.0e-56 223.4 428 39.3
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 8.9e-56 221.9 437 37.5
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.0e-55 220.7 433 38.1
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 7.5e-55 218.8 422 39.6
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 7.5e-55 218.8 432 38.2
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.2e-54 217.2 429 40.1
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.7e-54 216.5 418 38.5
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 6.4e-54 215.7 416 40.1
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.1e-53 214.9 442 36.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.2e-53 213.4 456 37.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.4e-53 212.6 432 39.1
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 7.8e-52 208.8 426 39.9
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.3e-51 208.0 428 38.8
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.2e-49 201.4 436 35.8
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.6e-49 201.1 540 31.3
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.8e-48 197.6 437 37.1
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.2e-47 194.9 430 35.1
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.0e-47 194.1 436 36.2
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 2.6e-47 193.7 416 35.8
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 9.8e-47 191.8 454 34.1
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 9.8e-47 191.8 424 36.8
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 6.4e-46 189.1 460 36.5
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.1e-45 188.3 447 35.6
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.9e-45 187.6 449 34.7
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.4e-45 187.2 458 33.6
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 3.2e-45 186.8 454 33.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.6e-44 184.5 446 34.3
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.6e-44 184.5 445 36.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.0e-44 184.1 444 34.5
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.7e-44 183.7 444 33.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 4.6e-44 183.0 360 38.9
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.8e-44 182.2 351 39.9
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.0e-43 181.8 450 34.0
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.0e-43 181.8 437 34.3
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 3.9e-43 179.9 447 35.3
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.6e-43 179.1 444 36.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.6e-43 178.7 449 33.6
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.5e-42 177.9 442 35.3
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.5e-42 177.2 405 37.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.3e-42 176.8 441 33.1
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.3e-42 176.4 451 33.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 5.6e-42 176.0 436 33.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 7.3e-42 175.6 457 33.9
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.2e-41 174.9 421 35.2
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.2e-41 174.9 432 33.1
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-41 174.9 434 34.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.6e-41 174.5 436 35.6
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.6e-41 174.5 436 35.1
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.2e-41 172.6 449 34.3
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.1e-40 171.8 439 32.3
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-40 171.4 452 33.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.3e-40 170.6 441 34.5
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 2.3e-40 170.6 447 34.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.0e-40 169.9 441 34.7
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 6.8e-40 169.1 443 32.5
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-39 167.9 406 35.5
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.5e-39 167.9 410 33.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.0e-39 167.5 445 33.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 4.4e-39 166.4 440 32.7
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-38 164.9 405 35.1
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.7e-38 164.5 418 35.4
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.7e-38 164.5 411 34.8
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 2.2e-38 164.1 435 33.8
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.2e-38 164.1 399 34.3
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.9e-38 163.7 459 32.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.7e-38 163.3 426 31.5
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.4e-38 162.5 451 32.4
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 6.4e-38 162.5 450 32.4
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 8.3e-38 162.2 390 34.9
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 8.3e-38 162.2 452 32.5
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 8.3e-38 162.2 454 33.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.4e-37 160.6 362 35.1
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 3.2e-37 160.2 442 33.3
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 4.1e-37 159.8 447 31.3
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.1e-37 159.8 465 31.8
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 5.4e-37 159.5 434 32.3
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 5.4e-37 159.5 423 31.7
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-36 158.3 406 34.2
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.6e-36 157.9 406 34.7
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 2.1e-36 157.5 372 35.2
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 3.5e-36 156.8 442 32.4
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.6e-36 156.4 420 32.1
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.3e-35 154.8 426 31.7
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.0e-35 153.7 415 33.0
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 3.0e-35 153.7 351 35.6
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 3.9e-35 153.3 414 31.4
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 5.1e-35 152.9 409 33.0
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.9e-34 151.0 418 31.6
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 2.5e-34 150.6 428 32.2
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.3e-34 150.2 431 32.3
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 4.3e-34 149.8 471 31.6
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 5.6e-34 149.4 360 34.4
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 7.3e-34 149.1 431 32.3
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 7.3e-34 149.1 390 34.6
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 7.3e-34 149.1 453 30.7
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 9.5e-34 148.7 421 32.1
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.2e-33 148.3 411 33.3
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 4.7e-33 146.4 415 33.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.2e-33 146.0 421 30.4
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.2e-33 146.0 432 30.6
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 8.1e-33 145.6 433 31.6
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.1e-32 145.2 438 32.4
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-32 144.8 433 30.5
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.4e-32 144.1 481 30.4
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 3.1e-32 143.7 415 33.3
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 8.9e-32 142.1 433 29.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.0e-31 141.0 425 31.3
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 2.6e-31 140.6 447 32.4
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 3.4e-31 140.2 414 32.1
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 4.4e-31 139.8 414 31.4
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 4.4e-31 139.8 412 30.3
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 5.8e-31 139.4 404 32.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.7e-30 137.9 365 34.0
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.8e-30 136.7 367 33.2
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.1e-29 135.2 430 30.9
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.4e-29 134.0 412 29.9
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 3.2e-29 133.7 431 32.7
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 4.1e-29 133.3 447 31.8
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.1e-29 133.3 423 31.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.2e-28 131.7 432 31.0
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.6e-28 131.3 423 28.4
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.1e-28 131.0 424 30.0
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 4.6e-28 129.8 342 36.5
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 6.0e-28 129.4 425 32.0
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.0e-27 128.6 314 35.7
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.3e-27 128.3 399 31.1
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.7e-27 127.9 498 29.7
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.0e-27 127.1 415 30.1
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.9e-27 126.7 415 29.9
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 3.9e-27 126.7 439 28.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.6e-27 125.9 307 35.8
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 6.6e-27 125.9 291 38.1
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 8.6e-27 125.6 438 30.8
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 8.6e-27 125.6 425 31.5
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.5e-26 124.0 433 31.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.5e-26 124.0 463 29.4
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.3e-26 123.6 444 30.2
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.2e-25 121.7 362 30.9
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.8e-25 120.6 429 31.5
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 8.1e-25 119.0 439 27.8
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 8.1e-25 119.0 373 31.1
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.8e-24 117.9 394 30.5
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 5.2e-24 116.3 418 29.7
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.5e-23 114.8 180 40.0
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 7.6e-23 112.5 418 29.2
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 9.9e-23 112.1 205 34.6
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.7e-22 111.3 422 28.9
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.4e-21 108.2 181 40.3
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.2e-21 107.1 265 36.6
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.2e-20 105.1 446 26.2
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 4.8e-17 93.2 175 37.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 4.8e-17 93.2 409 31.1
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 3.1e-16 90.5 395 26.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 9.3e-13 79.0 352 26.4
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.2e-12 78.6 272 32.0
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 4.6e-12 76.6 237 29.1
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-11 75.1 201 32.3
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.3e-11 74.3 168 34.5
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.3e-11 74.3 188 35.6
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 3.0e-11 73.9 231 29.9
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 6.7e-11 72.8 253 32.8
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 4.3e-10 70.1 203 31.0
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 3.7e-09 67.0 73 53.4
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-07 62.0 124 33.9
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.6e-07 60.8 182 34.6
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 7.6e-07 59.3 121 32.2
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 7.6e-07 59.3 317 24.9
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-06 57.8 157 28.7
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.4e-06 56.2 455 23.5
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-06 55.8 157 28.0


User provided reference genes

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