Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g017930.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 3.7e-23 110.5 50 100.0
Solyc04g018010.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 4.1e-22 107.1 50 94.0
Solyc07g064380.4 Solanum lycopersicum HOM05D001371 ORTHO05D001319 1.6e-18 95.1 49 83.7
Sopen07g032580 Solanum pennellii HOM05D001371 ORTHO05D001319 1.6e-18 95.1 49 83.7
Sopen07g032560 Solanum pennellii HOM05D001371 ORTHO05D001319 2.7e-18 94.4 49 83.7
Solyc12g039200.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 5.9e-13 76.6 48 68.8
PGSC0003DMG400013917 Solanum tuberosum HOM05D001371 ORTHO05D001319 2.2e-12 74.7 49 63.3
Peaxi162Scf00450g00078 Petunia axillaris HOM05D001371 ORTHO05D001319 1.1e-11 72.4 49 57.1
Solyc04g018000.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.5e-11 71.2 36 83.3
Peaxi162Scf00152g00530 Petunia axillaris HOM05D001371 ORTHO05D001319 9.4e-11 69.3 49 57.1
Solyc07g064360.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 1.2e-10 68.9 49 61.2
Nitab4.5_0000397g0330 Nicotiana tabacum HOM05D001371 ORTHO05D001319 2.3e-09 64.7 49 51.0
Nitab4.5_0001604g0030 Nicotiana tabacum HOM05D001371 ORTHO05D001319 3.9e-09 63.9 49 51.0
Solyc04g017900.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 1.5e-08 62.0 49 61.2
Lj8A168T103 Lonicera japonica HOM05D001371 ORTHO05D001319 5.7e-08 60.1 49 42.9
AT1G51538 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 1.7e-07 58.5 49 46.9
Cc05_g05620 Coffea canephora HOM05D001371 ORTHO05D001319 1.7e-07 58.5 49 51.0
AT4G16050 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 3.7e-07 57.4 49 42.9
BcaB07g33597 Brassica carinata HOM05D001371 ORTHO05D001319 4.8e-07 57.0 49 46.9
Aa31LG10G3280 Aethionema arabicum HOM05D001371 ORTHO05D001319 8.2e-07 56.2 49 46.9
Rhsim06G0215700 Rhododendron simsii HOM05D001371 ORTHO05D001319 8.2e-07 56.2 49 46.9
FvH4_3g22300 Fragaria vesca HOM05D001371 ORTHO05D001319 1.1e-06 55.8 49 44.9
Thhalv10011263m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 1.4e-06 55.5 49 46.9
Sp7g14520 Schrenkiella parvula HOM05D001371 ORTHO05D001319 1.4e-06 55.5 49 42.9
CARHR040860 Cardamine hirsuta HOM05D001371 ORTHO05D001319 1.8e-06 55.1 49 42.9
Cc05_g13550 Coffea canephora HOM05D001371 ORTHO05D001319 1.8e-06 55.1 49 46.9
AL6G29780 Arabidopsis lyrata HOM05D001371 ORTHO05D001319 2.4e-06 54.7 48 45.8
BcaC07g37948 Brassica carinata HOM05D001371 ORTHO05D001319 2.4e-06 54.7 49 40.8
CARHR041500 Cardamine hirsuta HOM05D001371 ORTHO05D001319 2.4e-06 54.7 49 42.9
Rhsim06G0215800 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.4e-06 54.7 48 41.7
CARHR041690 Cardamine hirsuta HOM05D001371 ORTHO05D001319 3.1e-06 54.3 49 42.9
EL10Ac4g07870 Beta vulgaris HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 46.9
BcaB07g33606 Brassica carinata HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 44.9
BcaC08g43256 Brassica carinata HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 42.9
C06p06020 Brassica napus HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 42.9
BolC6t35715H Brassica oleracea HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 42.9
COL.COLO4_10613 Corchorus olitorius HOM05D001371 ORTHO05D001319 4.1e-06 53.9 48 43.8
Thhalv10027173m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 40.8
MD03G1206300 Malus domestica HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 44.9
Sopen04g009370 Solanum pennellii HOM05D001371 ORTHO05D001319 4.1e-06 53.9 49 55.1
A06p02450 Brassica napus HOM05D001371 ORTHO05D001319 5.3e-06 53.5 49 44.9
BraA06t23450Z Brassica rapa HOM05D001371 ORTHO05D001319 5.3e-06 53.5 49 44.9
Thhalv10012017m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 5.3e-06 53.5 49 44.9
FvH4_3g22321 Fragaria vesca HOM05D001371 ORTHO05D001319 5.3e-06 53.5 46 43.5
Rhsim09G0021900 Rhododendron simsii HOM05D001371 ORTHO05D001319 5.3e-06 53.5 49 44.9
A08p12460 Brassica napus HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 38.8
BraA08t33210Z Brassica rapa HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 38.8
FAN03G3315 Fragaria x ananassa HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 44.9
Gorai.002G087400 Gossypium raimondii HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 42.9
Hma1.2p1_1222F.1_g268225 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 46.9
QL08p011750 Quercus lobata HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 42.9
Rhsim09G0022000 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.0e-06 53.1 49 44.9
Ah.04g165710 Amaranthus hybridus HOM05D001371 ORTHO05D001319 9.1e-06 52.8 49 44.9
AT1G50760 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 9.1e-06 52.8 48 39.6
AT1G50820 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 9.1e-06 52.8 49 42.9
CARHR290670 Cardamine hirsuta HOM05D001371 ORTHO05D001319 9.1e-06 52.8 49 38.8
FvH4_3g22331 Fragaria vesca HOM05D001371 ORTHO05D001319 9.1e-06 52.8 46 41.3
FvH4_7g03072 Fragaria vesca HOM05D001371 ORTHO05D001319 9.1e-06 52.8 49 44.9
FAN06G0975 Fragaria x ananassa HOM05D001371 ORTHO05D001319 9.1e-06 52.8 49 44.9
QL08p011743 Quercus lobata HOM05D001371 ORTHO05D001319 9.1e-06 52.8 48 45.8


User provided reference genes

Program Settings