Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g017860.1 Solanum lycopersicum HOM05D001371 ORTHO05D024807 1.1e-120 436.8 240 100.0
Solyc04g017790.1 Solanum lycopersicum HOM05D001371 ORTHO05D024807 1.3e-94 350.1 240 84.6
Solyc04g017890.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 7.0e-88 327.8 293 70.3
Sopen04g009370 Solanum pennellii HOM05D001371 ORTHO05D001319 5.6e-85 318.2 241 78.0
Sopen04g009120 Solanum pennellii HOM05D001371 ORTHO05D024807 2.1e-55 219.9 147 92.5
Sopen07g032580 Solanum pennellii HOM05D001371 ORTHO05D001319 2.7e-47 193.0 420 35.5
Solyc07g064380.4 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.4e-43 179.9 394 35.0
Sopen07g032560 Solanum pennellii HOM05D001371 ORTHO05D001319 7.6e-42 174.9 423 34.0
Solyc04g018000.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 7.1e-40 168.3 352 42.3
Solyc04g017880.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 3.1e-27 126.3 239 37.2
PGSC0003DMG400013917 Solanum tuberosum HOM05D001371 ORTHO05D001319 3.8e-17 92.8 68 67.6
Solyc04g017840.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 1.2e-15 87.8 62 71.0
Nitab4.5_0001604g0030 Nicotiana tabacum HOM05D001371 ORTHO05D001319 2.7e-15 86.7 69 58.0
Solyc07g064360.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.7e-15 86.7 101 45.5
Nitab4.5_0000397g0330 Nicotiana tabacum HOM05D001371 ORTHO05D001319 8.8e-14 81.6 69 55.1
Solyc07g064400.2 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.2e-12 77.0 71 64.8
Sopen07g032600 Solanum pennellii HOM05D001371 ORTHO05D001319 2.2e-12 77.0 71 64.8
PGSC0003DMG400037606 Solanum tuberosum HOM05D001371 ORTHO05D001319 3.7e-12 76.3 90 48.9
RcHm_v2.0_Chr5g0038771 Rosa chinensis HOM05D001371 ORTHO05D001319 6.3e-12 75.5 69 56.5
Sopen07g032520 Solanum pennellii HOM05D001371 ORTHO05D001319 6.3e-12 75.5 95 44.2
QL08p011750 Quercus lobata HOM05D001371 ORTHO05D001319 1.8e-11 73.9 74 50.0
Dinv22278 Davidia involucrata HOM05D001371 ORTHO05D001319 2.4e-11 73.6 70 51.4
Hma1.2p1_0673F.1_g201150 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 1.5e-10 70.9 70 47.1
Hma1.2p1_1222F.1_g268280 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 1.5e-10 70.9 70 47.1
QL05p065318 Quercus lobata HOM05D001371 ORTHO05D001319 2.6e-10 70.1 70 50.0
RcHm_v2.0_Chr5g0038801 Rosa chinensis HOM05D001371 ORTHO05D001319 2.6e-10 70.1 68 51.5
PGSC0003DMG400022226 Solanum tuberosum HOM05D001371 ORTHO05D001319 2.6e-10 70.1 70 61.4
Rhsim06G0215700 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.5e-10 69.3 74 44.6
FvH4_3g22300 Fragaria vesca HOM05D001371 ORTHO05D001319 5.9e-10 68.9 69 52.2
Haze_09653 Corylus avellana HOM05D001371 ORTHO05D001319 7.7e-10 68.6 112 35.7
CSS0038284 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 1.0e-09 68.2 70 48.6
Cc05_g05620 Coffea canephora HOM05D001371 ORTHO05D001319 1.0e-09 68.2 68 45.6
RcHm_v2.0_Chr5g0038781 Rosa chinensis HOM05D001371 ORTHO05D001319 1.0e-09 68.2 68 50.0
Ah.12g058160 Amaranthus hybridus HOM05D001371 ORTHO05D001319 2.2e-09 67.0 116 37.1
CSS0037215 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 2.2e-09 67.0 71 46.5
FAN16G2046 Fragaria x ananassa HOM05D001371 ORTHO05D001319 2.9e-09 66.6 68 47.1
TWI38G1035 Tripterygium wilfordii HOM05D001371 ORTHO05D001319 2.9e-09 66.6 68 47.1
COL.COLO4_09641 Corchorus olitorius HOM05D001371 ORTHO05D001319 3.8e-09 66.2 74 44.6
Peaxi162Scf00152g00530 Petunia axillaris HOM05D001371 ORTHO05D001319 3.8e-09 66.2 111 41.4
MD03G1206300 Malus domestica HOM05D001371 ORTHO05D001319 5.0e-09 65.9 67 49.3
FAN03G3315 Fragaria x ananassa HOM05D001371 ORTHO05D001319 6.5e-09 65.5 70 48.6
Hma1.2p1_1222F.1_g268225 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 6.5e-09 65.5 68 45.6
QL08p011669 Quercus lobata HOM05D001371 ORTHO05D001319 8.5e-09 65.1 68 47.1
Rhsim06G0215800 Rhododendron simsii HOM05D001371 ORTHO05D001319 8.5e-09 65.1 70 47.1
COL.COLO4_10613 Corchorus olitorius HOM05D001371 ORTHO05D001319 1.1e-08 64.7 70 45.7
Gorai.002G087400 Gossypium raimondii HOM05D001371 ORTHO05D001319 1.1e-08 64.7 70 44.3
Lj6g0000404 Lotus japonicus HOM05D001371 ORTHO05D001319 1.1e-08 64.7 69 44.9
EL10Ac4g07870 Beta vulgaris HOM05D001371 ORTHO05D001319 1.4e-08 64.3 68 44.1
FvH4_3g22280 Fragaria vesca HOM05D001371 ORTHO05D001319 1.4e-08 64.3 72 47.2
Cc05_g13550 Coffea canephora HOM05D001371 ORTHO05D001319 1.9e-08 63.9 68 42.6
FvH4_3g22331 Fragaria vesca HOM05D001371 ORTHO05D001319 1.9e-08 63.9 68 45.6
Lj1C870G3 Lonicera japonica HOM05D000134 ORTHO05D001319 1.9e-08 63.9 70 48.6
PGSC0003DMG402013916 Solanum tuberosum HOM05D001371 ORTHO05D024807 1.9e-08 63.9 92 56.5
CSS0038333 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 2.5e-08 63.5 68 47.1
Duzib213G0856 Durio zibethinus HOM05D001371 ORTHO05D001319 2.5e-08 63.5 74 41.9
QL08p011743 Quercus lobata HOM05D001371 ORTHO05D001319 2.5e-08 63.5 70 44.3
Duzib268G0763 Durio zibethinus HOM05D001371 ORTHO05D001319 3.2e-08 63.2 70 42.9
Lj6g0015747 Lotus japonicus HOM05D001371 ORTHO05D001319 3.2e-08 63.2 70 47.1
QL05p063779 Quercus lobata HOM05D001371 ORTHO05D001319 3.2e-08 63.2 70 50.0
Solyc04g017800.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 3.2e-08 63.2 66 56.1
Lj6g0005634 Lotus japonicus HOM05D001371 ORTHO05D001319 4.2e-08 62.8 70 47.1
RcHm_v2.0_Chr5g0038741 Rosa chinensis HOM05D001371 ORTHO05D001319 5.5e-08 62.4 72 45.8
Prupe.4G209800 Prunus persica HOM05D001371 ORTHO05D001319 7.2e-08 62.0 70 47.1
Hma1.2p1_1271F.1_g271770 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 9.4e-08 61.6 72 48.6
Lj6g0012919 Lotus japonicus HOM05D001371 ORTHO05D001319 9.4e-08 61.6 70 45.7
QL08p011808 Quercus lobata HOM05D001371 ORTHO05D001319 9.4e-08 61.6 70 48.6
Rhsim06G0215500 Rhododendron simsii HOM05D001371 ORTHO05D001319 9.4e-08 61.6 70 44.3
VMungo0540G1413 Vigna mungo HOM05D001371 ORTHO05D001319 9.4e-08 61.6 70 42.9
FvH4_3g22321 Fragaria vesca HOM05D001371 ORTHO05D001319 1.2e-07 61.2 50 58.0
FvH4_7g03072 Fragaria vesca HOM05D001371 ORTHO05D001319 1.2e-07 61.2 70 47.1
FAN06G0975 Fragaria x ananassa HOM05D001371 ORTHO05D001319 1.2e-07 61.2 70 47.1
Peaxi162Scf00450g00078 Petunia axillaris HOM05D001371 ORTHO05D001319 1.6e-07 60.8 68 50.0
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.6e-07 60.8 70 44.3
Sc03g0008760 Simmondsia chinensis HOM05D001371 ORTHO05D001319 1.6e-07 60.8 119 32.8
TWI39G0393 Tripterygium wilfordii HOM05D001371 ORTHO05D001319 1.6e-07 60.8 71 40.8
Actinidia35333 Actinidia chinensis HOM05D001371 ORTHO05D001319 2.1e-07 60.5 82 41.5
Duzib052G0957 Durio zibethinus HOM05D001371 ORTHO05D001319 2.1e-07 60.5 115 33.0
Prupe.4G209700 Prunus persica HOM05D001371 ORTHO05D001319 2.1e-07 60.5 70 42.9
RcHm_v2.0_Chr5g0038381 Rosa chinensis HOM05D001371 ORTHO05D001319 2.1e-07 60.5 72 45.8
Sopen07g032530 Solanum pennellii HOM05D001371 ORTHO05D001319 2.1e-07 60.5 66 45.5
EL10Ac4g07855 Beta vulgaris HOM05D001371 ORTHO05D001319 2.7e-07 60.1 64 46.9
COL.COLO4_09639 Corchorus olitorius HOM05D001371 ORTHO05D001319 2.7e-07 60.1 70 40.0
Gorai.005G249100 Gossypium raimondii HOM05D001371 ORTHO05D001319 2.7e-07 60.1 70 42.9
Lj8A168T103 Lonicera japonica HOM05D001371 ORTHO05D001319 2.7e-07 60.1 71 46.5
Lj8C168T12 Lonicera japonica HOM05D001371 ORTHO05D001319 3.6e-07 59.7 70 45.7
Psat2g014080 Pisum sativum HOM05D001371 ORTHO05D001319 3.6e-07 59.7 90 36.7
Aqoxy2G02406 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 4.7e-07 59.3 70 45.7
AUR62020479 Chenopodium quinoa HOM05D001371 ORTHO05D001319 4.7e-07 59.3 66 43.9
Duzib248G0853 Durio zibethinus HOM05D001371 ORTHO05D001319 4.7e-07 59.3 70 41.4
FAN21G0036 Fragaria x ananassa HOM05D001371 ORTHO05D001319 4.7e-07 59.3 72 41.7
RcHm_v2.0_Chr5g0038491 Rosa chinensis HOM05D001371 ORTHO05D001319 4.7e-07 59.3 56 55.4
RcHm_v2.0_Chr5g0038731 Rosa chinensis HOM05D001371 ORTHO05D001319 4.7e-07 59.3 47 59.6
Duzib132G0682 Durio zibethinus HOM05D001371 ORTHO05D001319 6.1e-07 58.9 70 42.9
Hma1.2p1_0062F.1_g034280 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 6.1e-07 58.9 71 46.5
Lalb_Chr02g0155751 Lupinus albus HOM05D001371 ORTHO05D001319 6.1e-07 58.9 70 45.7
Rhsim06G0215600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.1e-07 58.9 69 42.0
TPR.G24069 Trifolium pratense HOM05D001371 ORTHO05D001319 6.1e-07 58.9 60 46.7
vmacro21038 Vaccinium macrocarpon HOM05D001371 ORTHO05D001319 6.1e-07 58.9 80 45.0
AT5G18510 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 8.0e-07 58.5 67 44.8
Haze_09654 Corylus avellana HOM05D001371 ORTHO05D001319 8.0e-07 58.5 68 36.8
FvH4_3g22281 Fragaria vesca HOM05D001371 ORTHO05D001319 8.0e-07 58.5 72 44.4
Lj1g0013444 Lotus japonicus HOM05D001371 ORTHO05D001319 8.0e-07 58.5 75 45.3
QL08p011730 Quercus lobata HOM05D001371 ORTHO05D001319 8.0e-07 58.5 70 42.9
arahy.Tifrunner.gnm1.ann1.Y9R7EH Arachis hypogaea HOM05D001371 ORTHO05D001319 1.0e-06 58.2 89 37.1
Lj1A870T72 Lonicera japonica HOM05D001371 ORTHO05D001319 1.0e-06 58.2 70 44.3
Ah.04g165710 Amaranthus hybridus HOM05D001371 ORTHO05D001319 1.4e-06 57.8 66 40.9
COL.COLO4_09640 Corchorus olitorius HOM05D001371 ORTHO05D001319 1.4e-06 57.8 68 42.6
Duzib213G0305 Durio zibethinus HOM05D001371 ORTHO05D001319 1.4e-06 57.8 68 44.1
Lj6g0016509 Lotus japonicus HOM05D001371 ORTHO05D001319 1.4e-06 57.8 70 42.9
Nn1g03577 Nelumbo nucifera HOM05D001371 ORTHO05D001319 1.4e-06 57.8 68 41.2
Sabra16G0286500 Salix brachista HOM05D001371 ORTHO05D001319 1.4e-06 57.8 74 39.2
AUR62015730 Chenopodium quinoa HOM05D001371 ORTHO05D001319 1.8e-06 57.4 66 43.9
Dinv22276 Davidia involucrata HOM05D001371 ORTHO05D001319 1.8e-06 57.4 76 38.2
QL08p011782 Quercus lobata HOM05D001371 ORTHO05D001319 1.8e-06 57.4 68 39.7
Lj8C168T14 Lonicera japonica HOM05D001371 ORTHO05D001319 2.3e-06 57.0 70 42.9
Sp1g27780 Schrenkiella parvula HOM05D001371 ORTHO05D001319 2.3e-06 57.0 70 38.6
GSVIVG01037611001 Vitis vinifera HOM05D001371 ORTHO05D001319 2.3e-06 57.0 88 31.8
Aqoxy7G03260 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 3.0e-06 56.6 109 36.7
MELO3C018073.2 Cucumis melo HOM05D001371 ORTHO05D001319 3.0e-06 56.6 70 34.3
Thhalv10017562m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 3.0e-06 56.6 70 40.0
Sabra16G0286400 Salix brachista HOM05D001371 ORTHO05D001319 3.0e-06 56.6 69 40.6
CANSAT56G1392 Cannabis sativa HOM05D001371 ORTHO05D001319 3.9e-06 56.2 68 42.6
AUR62020491 Chenopodium quinoa HOM05D001371 ORTHO05D001319 3.9e-06 56.2 70 38.6
COL.COLO4_22820 Corchorus olitorius HOM05D001371 ORTHO05D001319 3.9e-06 56.2 69 40.6
Nitab4.5_0007952g0010 Nicotiana tabacum HOM05D001371 ORTHO05D001319 3.9e-06 56.2 66 40.9
QL08p011658 Quercus lobata HOM05D001371 ORTHO05D001319 3.9e-06 56.2 70 42.9
RhsimUnG0223800 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.9e-06 56.2 71 47.9
Sp4g17760 Schrenkiella parvula HOM05D001371 ORTHO05D001319 3.9e-06 56.2 70 40.0
Actinidia09910 Actinidia chinensis HOM05D001371 ORTHO05D001319 5.2e-06 55.8 70 42.9
arahy.Tifrunner.gnm1.ann1.UWY4YC Arachis hypogaea HOM05D001371 ORTHO05D001319 5.2e-06 55.8 89 36.0
BcaB02g09419 Brassica carinata HOM05D001371 ORTHO05D001319 5.2e-06 55.8 70 38.6
AUR62020483 Chenopodium quinoa HOM05D001371 ORTHO05D001319 5.2e-06 55.8 72 36.1
Rhsim09G0021900 Rhododendron simsii HOM05D001371 ORTHO05D001319 5.2e-06 55.8 71 45.1
Rhsim09G0022000 Rhododendron simsii HOM05D001371 ORTHO05D001319 5.2e-06 55.8 71 45.1
Sed0015741 Sechium edule HOM05D001371 ORTHO05D001319 5.2e-06 55.8 69 39.1
Solyc12g039200.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 5.2e-06 55.8 34 67.6
EL10Ac4g07860 Beta vulgaris HOM05D001371 ORTHO05D001319 6.7e-06 55.5 64 42.2
BcaB04g18353 Brassica carinata HOM05D001371 ORTHO05D001319 6.7e-06 55.5 111 34.2
BcaB07g32873 Brassica carinata HOM05D001371 ORTHO05D001319 6.7e-06 55.5 50 46.0
Psat5g179880 Pisum sativum HOM05D001371 ORTHO05D001319 6.7e-06 55.5 72 34.7
Rhsim06G0217900 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.7e-06 55.5 70 40.0
MSTRG.11923 Avicennia marina HOM05D001371 ORTHO05D001319 8.8e-06 55.1 70 42.9
BraA09t38953Z Brassica rapa HOM05D001371 ORTHO05D001319 8.8e-06 55.1 50 46.0
AUR62015722 Chenopodium quinoa HOM05D001371 ORTHO05D001319 8.8e-06 55.1 68 38.2
ECA236G1250 Erigeron canadensis HOM05D000096 ORTHO05D001319 8.8e-06 55.1 70 42.9
Hma1.2p1_0673F.1_g201180 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 8.8e-06 55.1 68 39.7
Peaxi162Scf00094g01122 Petunia axillaris HOM05D001371 ORTHO05D001319 8.8e-06 55.1 65 41.5


User provided reference genes

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