Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g017790.1 Solanum lycopersicum HOM05D001371 ORTHO05D024807 9.4e-111 403.7 225 100.0
Solyc04g017860.1 Solanum lycopersicum HOM05D001371 ORTHO05D024807 9.5e-95 350.5 240 84.6
Sopen04g009370 Solanum pennellii HOM05D001371 ORTHO05D001319 2.2e-83 312.8 241 76.8
Solyc04g017890.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 3.7e-83 312.0 293 67.6
Sopen04g009120 Solanum pennellii HOM05D001371 ORTHO05D024807 1.8e-53 213.4 147 90.5
Sopen07g032580 Solanum pennellii HOM05D001371 ORTHO05D001319 1.6e-38 163.7 420 32.1
Solyc07g064380.4 Solanum lycopersicum HOM05D001371 ORTHO05D001319 1.1e-37 161.0 394 33.2
Solyc04g018000.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.1e-33 146.7 352 40.3
Sopen07g032560 Solanum pennellii HOM05D001371 ORTHO05D001319 2.1e-33 146.7 423 30.7
Solyc04g017880.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 1.5e-23 114.0 239 35.6
PGSC0003DMG400013917 Solanum tuberosum HOM05D001371 ORTHO05D001319 9.4e-18 94.7 68 67.6
Nitab4.5_0001604g0030 Nicotiana tabacum HOM05D001371 ORTHO05D001319 6.7e-16 88.6 69 58.0
Solyc07g064360.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.6e-15 86.7 68 60.3
Solyc04g017840.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 5.7e-15 85.5 62 69.4
Nitab4.5_0000397g0330 Nicotiana tabacum HOM05D001371 ORTHO05D001319 2.2e-14 83.6 69 55.1
Solyc07g064400.2 Solanum lycopersicum HOM05D001371 ORTHO05D001319 5.3e-13 79.0 76 59.2
Sopen07g032520 Solanum pennellii HOM05D001371 ORTHO05D001319 5.3e-13 79.0 62 61.3
Sopen07g032600 Solanum pennellii HOM05D001371 ORTHO05D001319 9.1e-13 78.2 71 62.0
RcHm_v2.0_Chr5g0038771 Rosa chinensis HOM05D001371 ORTHO05D001319 4.5e-12 75.9 69 55.1
PGSC0003DMG400037606 Solanum tuberosum HOM05D001371 ORTHO05D001319 4.5e-12 75.9 91 46.2
Dinv22278 Davidia involucrata HOM05D001371 ORTHO05D001319 5.9e-12 75.5 70 51.4
COL.COLO4_09641 Corchorus olitorius HOM05D001371 ORTHO05D001319 5.0e-11 72.4 74 47.3
Hma1.2p1_0673F.1_g201150 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 6.5e-11 72.0 70 47.1
Hma1.2p1_1222F.1_g268280 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 6.5e-11 72.0 70 47.1
RcHm_v2.0_Chr5g0038801 Rosa chinensis HOM05D001371 ORTHO05D001319 6.5e-11 72.0 68 51.5
COL.COLO4_10613 Corchorus olitorius HOM05D001371 ORTHO05D001319 1.5e-10 70.9 70 48.6
FvH4_3g22300 Fragaria vesca HOM05D001371 ORTHO05D001319 1.5e-10 70.9 69 52.2
QL08p011750 Quercus lobata HOM05D001371 ORTHO05D001319 1.5e-10 70.9 74 47.3
Cc05_g05620 Coffea canephora HOM05D001371 ORTHO05D001319 2.5e-10 70.1 68 45.6
RcHm_v2.0_Chr5g0038781 Rosa chinensis HOM05D001371 ORTHO05D001319 2.5e-10 70.1 68 50.0
QL05p065318 Quercus lobata HOM05D001371 ORTHO05D001319 3.2e-10 69.7 70 48.6
QL08p011669 Quercus lobata HOM05D001371 ORTHO05D001319 3.2e-10 69.7 68 48.5
Rhsim06G0215800 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.2e-10 69.7 86 43.0
PGSC0003DMG400022226 Solanum tuberosum HOM05D001371 ORTHO05D001319 4.2e-10 69.3 71 54.9
FAN03G3315 Fragaria x ananassa HOM05D001371 ORTHO05D001319 7.2e-10 68.6 109 39.4
FAN16G2046 Fragaria x ananassa HOM05D001371 ORTHO05D001319 7.2e-10 68.6 68 47.1
CSS0037215 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 9.4e-10 68.2 71 46.5
Lj6g0000404 Lotus japonicus HOM05D001371 ORTHO05D001319 9.4e-10 68.2 69 46.4
Duzib052G0957 Durio zibethinus HOM05D001371 ORTHO05D001319 1.2e-09 67.8 109 36.7
Gorai.002G087400 Gossypium raimondii HOM05D001371 ORTHO05D001319 1.2e-09 67.8 86 39.5
Hma1.2p1_1222F.1_g268225 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 1.2e-09 67.8 68 45.6
Haze_09653 Corylus avellana HOM05D001371 ORTHO05D001319 1.6e-09 67.4 70 50.0
Duzib213G0856 Durio zibethinus HOM05D001371 ORTHO05D001319 2.7e-09 66.6 86 40.7
QL08p011743 Quercus lobata HOM05D001371 ORTHO05D001319 2.7e-09 66.6 70 44.3
Duzib132G0682 Durio zibethinus HOM05D001371 ORTHO05D001319 3.6e-09 66.2 109 37.6
Duzib248G0853 Durio zibethinus HOM05D001371 ORTHO05D001319 3.6e-09 66.2 109 35.8
Gorai.005G249100 Gossypium raimondii HOM05D001371 ORTHO05D001319 3.6e-09 66.2 70 45.7
Cc05_g13550 Coffea canephora HOM05D001371 ORTHO05D001319 4.7e-09 65.9 68 42.6
Rhsim06G0215700 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.7e-09 65.9 74 41.9
TWI38G1035 Tripterygium wilfordii HOM05D001371 ORTHO05D001319 4.7e-09 65.9 82 41.5
Aqoxy2G02406 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 6.1e-09 65.5 70 50.0
MD03G1206300 Malus domestica HOM05D001371 ORTHO05D001319 6.1e-09 65.5 67 46.3
PGSC0003DMG402013916 Solanum tuberosum HOM05D001371 ORTHO05D024807 6.1e-09 65.5 94 56.4
FAN21G0036 Fragaria x ananassa HOM05D001371 ORTHO05D001319 8.0e-09 65.1 72 43.1
Actinidia35333 Actinidia chinensis HOM05D001371 ORTHO05D001319 1.0e-08 64.7 82 41.5
FvH4_7g03072 Fragaria vesca HOM05D001371 ORTHO05D001319 1.4e-08 64.3 109 38.5
FAN06G0975 Fragaria x ananassa HOM05D001371 ORTHO05D001319 1.4e-08 64.3 109 38.5
Rhsim06G0215500 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.4e-08 64.3 70 42.9
RcHm_v2.0_Chr5g0038741 Rosa chinensis HOM05D001371 ORTHO05D001319 1.4e-08 64.3 72 45.8
Sc03g0008760 Simmondsia chinensis HOM05D001371 ORTHO05D001319 1.4e-08 64.3 79 39.2
CSS0038284 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 1.8e-08 63.9 70 45.7
COL.COLO4_09639 Corchorus olitorius HOM05D001371 ORTHO05D001319 1.8e-08 63.9 70 41.4
CSS0038333 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 3.0e-08 63.2 68 44.1
FvH4_3g22321 Fragaria vesca HOM05D001371 ORTHO05D001319 3.0e-08 63.2 50 58.0
Prupe.4G209800 Prunus persica HOM05D001371 ORTHO05D001319 3.0e-08 63.2 70 47.1
Dinv22276 Davidia involucrata HOM05D001371 ORTHO05D001319 4.0e-08 62.8 84 39.3
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.0e-08 62.8 70 42.9
FvH4_3g22280 Fragaria vesca HOM05D001371 ORTHO05D001319 5.2e-08 62.4 72 45.8
FvH4_3g22281 Fragaria vesca HOM05D001371 ORTHO05D001319 5.2e-08 62.4 97 37.1
FvH4_3g22331 Fragaria vesca HOM05D001371 ORTHO05D001319 5.2e-08 62.4 68 44.1
RcHm_v2.0_Chr5g0038381 Rosa chinensis HOM05D001371 ORTHO05D001319 5.2e-08 62.4 72 45.8
Prupe.4G209700 Prunus persica HOM05D001371 ORTHO05D001319 8.8e-08 61.6 70 44.3
Solyc12g039200.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 8.8e-08 61.6 34 76.5
Duzib268G0763 Durio zibethinus HOM05D001371 ORTHO05D001319 1.1e-07 61.2 70 41.4
RcHm_v2.0_Chr5g0038731 Rosa chinensis HOM05D001371 ORTHO05D001319 1.1e-07 61.2 47 59.6
Ah.12g058160 Amaranthus hybridus HOM05D001371 ORTHO05D001319 1.5e-07 60.8 65 46.2
Lj6g0015747 Lotus japonicus HOM05D001371 ORTHO05D001319 1.5e-07 60.8 70 45.7
Lalb_Chr02g0155751 Lupinus albus HOM05D001371 ORTHO05D001319 1.5e-07 60.8 70 45.7
Peaxi162Scf00152g00530 Petunia axillaris HOM05D001371 ORTHO05D001319 1.5e-07 60.8 70 50.0
QL05p063779 Quercus lobata HOM05D001371 ORTHO05D001319 1.5e-07 60.8 70 48.6
Rhsim06G0215600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.5e-07 60.8 69 40.6
CANSAT56G1392 Cannabis sativa HOM05D001371 ORTHO05D001319 2.0e-07 60.5 78 38.5
Lj8C168T12 Lonicera japonica HOM05D001371 ORTHO05D001319 2.0e-07 60.5 86 39.5
Lj6g0005634 Lotus japonicus HOM05D001371 ORTHO05D001319 2.0e-07 60.5 70 45.7
VMungo0540G1413 Vigna mungo HOM05D001371 ORTHO05D001319 2.0e-07 60.5 105 34.3
Haze_09654 Corylus avellana HOM05D001371 ORTHO05D001319 2.6e-07 60.1 68 36.8
Lj6g0012919 Lotus japonicus HOM05D001371 ORTHO05D001319 2.6e-07 60.1 70 44.3
Peaxi162Scf00450g00737 Petunia axillaris HOM05D001371 ORTHO05D001319 2.6e-07 60.1 50 50.0
Sopen07g032530 Solanum pennellii HOM05D001371 ORTHO05D001319 2.6e-07 60.1 63 44.4
COL.COLO4_09640 Corchorus olitorius HOM05D001371 ORTHO05D001319 3.3e-07 59.7 68 44.1
Lj8C168T14 Lonicera japonica HOM05D001371 ORTHO05D001319 3.3e-07 59.7 70 45.7
Aqoxy5G03502 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 4.4e-07 59.3 68 45.6
EL10Ac4g07870 Beta vulgaris HOM05D001371 ORTHO05D001319 4.4e-07 59.3 68 41.2
Duzib213G0305 Durio zibethinus HOM05D001371 ORTHO05D001319 4.4e-07 59.3 68 47.1
Lj8A168T103 Lonicera japonica HOM05D001371 ORTHO05D001319 4.4e-07 59.3 70 42.9
QL08p011782 Quercus lobata HOM05D001371 ORTHO05D001319 4.4e-07 59.3 68 39.7
QL08p011808 Quercus lobata HOM05D001371 ORTHO05D001319 4.4e-07 59.3 70 47.1
TPR.G24069 Trifolium pratense HOM05D001371 ORTHO05D001319 4.4e-07 59.3 60 45.0
Aqoxy7G03260 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 5.7e-07 58.9 102 38.2
AUR62020483 Chenopodium quinoa HOM05D001371 ORTHO05D001319 7.5e-07 58.5 72 34.7
Hma1.2p1_0062F.1_g034280 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 7.5e-07 58.5 71 45.1
Lj1C870G3 Lonicera japonica HOM05D000134 ORTHO05D001319 7.5e-07 58.5 70 44.3
Peaxi162Scf00450g00078 Petunia axillaris HOM05D001371 ORTHO05D001319 7.5e-07 58.5 70 50.0
Solyc04g017800.1 Solanum lycopersicum HOM05D001371 ORTHO05D001319 7.5e-07 58.5 66 53.0
AT5G18510 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 9.7e-07 58.2 67 43.3
Nitab4.5_0007952g0010 Nicotiana tabacum HOM05D001371 ORTHO05D001319 9.7e-07 58.2 63 42.9
Psat5g179880 Pisum sativum HOM05D001371 ORTHO05D001319 9.7e-07 58.2 72 36.1
QL08p011730 Quercus lobata HOM05D001371 ORTHO05D001319 9.7e-07 58.2 70 41.4
Sp1g27780 Schrenkiella parvula HOM05D001371 ORTHO05D001319 9.7e-07 58.2 70 38.6
BcaB04g18353 Brassica carinata HOM05D001371 ORTHO05D001319 1.7e-06 57.4 107 35.5
BcaB07g32873 Brassica carinata HOM05D001371 ORTHO05D001319 1.7e-06 57.4 50 46.0
ECA236G1250 Erigeron canadensis HOM05D000096 ORTHO05D001319 1.7e-06 57.4 53 50.9
QL08p011658 Quercus lobata HOM05D001371 ORTHO05D001319 1.7e-06 57.4 70 42.9
Rhsim06G0217900 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.7e-06 57.4 70 38.6
TWI39G0393 Tripterygium wilfordii HOM05D001371 ORTHO05D001319 1.7e-06 57.4 72 41.7
GSVIVG01037611001 Vitis vinifera HOM05D001371 ORTHO05D001319 1.7e-06 57.4 76 32.9
MSTRG.11923 Avicennia marina HOM05D001371 ORTHO05D001319 2.2e-06 57.0 70 42.9
BraA09t38953Z Brassica rapa HOM05D001371 ORTHO05D001319 2.2e-06 57.0 50 46.0
Hma1.2p1_1271F.1_g271770 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 2.2e-06 57.0 71 43.7
Lj1g0013444 Lotus japonicus HOM05D001371 ORTHO05D001319 2.2e-06 57.0 87 40.2
Nn1g03577 Nelumbo nucifera HOM05D001371 ORTHO05D001319 2.2e-06 57.0 68 42.6
AL6G29780 Arabidopsis lyrata HOM05D001371 ORTHO05D001319 2.8e-06 56.6 67 40.3
EL10Ac4g07855 Beta vulgaris HOM05D001371 ORTHO05D001319 2.8e-06 56.6 61 45.9
Ca_27398_v3 Cicer arietinum L. HOM05D001371 ORTHO05D001319 2.8e-06 56.6 70 41.4
Psat2g014080 Pisum sativum HOM05D001371 ORTHO05D001319 2.8e-06 56.6 67 41.8
arahy.Tifrunner.gnm1.ann1.Y9R7EH Arachis hypogaea HOM05D001371 ORTHO05D001319 3.7e-06 56.2 67 41.8
Peaxi162Scf00094g01121 Petunia axillaris HOM05D001371 ORTHO05D001319 3.7e-06 56.2 43 53.5
RcHm_v2.0_Chr5g0038491 Rosa chinensis HOM05D001371 ORTHO05D001319 3.7e-06 56.2 56 51.8
Peaxi162Scf00094g01122 Petunia axillaris HOM05D001371 ORTHO05D001319 4.8e-06 55.8 65 41.5
AUR62020479 Chenopodium quinoa HOM05D001371 ORTHO05D001319 6.3e-06 55.5 66 39.4
Ca_14714_v3 Cicer arietinum L. HOM05D001371 ORTHO05D001319 6.3e-06 55.5 69 42.0
Thhalv10027173m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 6.3e-06 55.5 103 35.9
Lj6g0016509 Lotus japonicus HOM05D001371 ORTHO05D001319 6.3e-06 55.5 70 41.4
Rhsim09G0021900 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.3e-06 55.5 71 43.7
Rhsim09G0022000 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.3e-06 55.5 71 43.7
Sp1g38170 Schrenkiella parvula HOM05D001371 ORTHO05D001319 6.3e-06 55.5 57 45.6
vmacro21038 Vaccinium macrocarpon HOM05D001371 ORTHO05D001319 6.3e-06 55.5 80 41.2
EL10Ac4g07860 Beta vulgaris HOM05D001371 ORTHO05D001319 8.2e-06 55.1 64 39.1
Hma1.2p1_0673F.1_g201180 Hydrangea macrophylla HOM05D001371 ORTHO05D001319 8.2e-06 55.1 87 34.5
Lj1A870T72 Lonicera japonica HOM05D001371 ORTHO05D001319 8.2e-06 55.1 112 33.9
Psat5g179960 Pisum sativum HOM05D001371 ORTHO05D001319 8.2e-06 55.1 75 38.7
QL08p011662 Quercus lobata HOM05D001371 ORTHO05D001319 8.2e-06 55.1 73 42.5


User provided reference genes

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