Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 1.3e-170 602.8 285 100.0
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.3e-168 596.3 285 98.6
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 6.2e-168 594.0 285 98.2
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 3.0e-162 575.1 285 94.0
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.1e-159 566.6 285 93.0
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.9e-157 558.5 285 91.9
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.7e-152 541.6 285 87.4
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.7e-152 541.6 285 87.4
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 4.8e-152 541.2 282 88.3
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 3.1e-151 538.5 284 88.0
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 6.9e-151 537.3 285 86.0
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 2.0e-150 535.8 284 88.4
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 7.7e-150 533.9 285 88.1
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.9e-149 531.9 285 86.3
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 6.5e-149 530.8 285 86.3
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 8.5e-149 530.4 285 86.7
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.9e-148 529.3 285 85.6
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 1.9e-148 529.3 284 85.9
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.5e-148 528.9 285 86.7
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 2.5e-148 528.9 285 86.7
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 86.7
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 85.6
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 5.5e-148 527.7 287 86.4
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 5.5e-148 527.7 283 86.6
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 7.2e-148 527.3 282 86.9
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 7.2e-148 527.3 285 85.6
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.6e-147 526.2 288 86.1
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 1.6e-147 526.2 285 85.6
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.1e-147 525.8 282 85.5
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.7e-147 525.4 285 85.3
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 3.6e-147 525.0 286 85.3
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 85.6
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 85.3
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.6
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 6.1e-147 524.2 285 86.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.0e-146 523.5 284 83.1
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.0e-146 523.5 285 86.0
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.4e-146 523.1 284 84.9
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 1.4e-146 523.1 285 84.9
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 2.3e-146 522.3 284 84.9
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.3e-146 522.3 283 84.8
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.3e-146 522.3 282 86.2
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 3.9e-146 521.5 285 84.6
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 5.1e-146 521.2 284 86.3
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 5.1e-146 521.2 284 86.3
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.2
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 1.5e-145 519.6 284 85.2
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.5e-145 519.6 284 83.8
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.5e-145 519.6 285 84.6
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 2.6e-145 518.8 289 84.4
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 3.3e-145 518.5 281 84.7
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 3.3e-145 518.5 282 84.8
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 5.7e-145 517.7 284 85.9
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.7e-145 517.7 285 86.0
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 7.4e-145 517.3 282 84.0
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 7.4e-145 517.3 282 85.5
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 9.7e-145 516.9 284 83.1
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 2.2e-144 515.8 290 84.5
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 3.7e-144 515.0 273 86.1
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 84.5
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.4e-143 513.1 285 86.0
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 3.1e-143 511.9 284 83.1
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 5.3e-143 511.1 284 81.0
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 9.1e-143 510.4 281 82.9
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.0e-142 509.2 286 83.2
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 3.4e-142 508.4 284 82.7
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 4.5e-142 508.1 281 81.9
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 5.9e-142 507.7 284 82.7
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 5.9e-142 507.7 283 83.7
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 1.3e-141 506.5 285 81.8
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.3e-141 506.5 283 82.7
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 2.9e-141 505.4 285 82.5
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 8.5e-141 503.8 279 84.6
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.1e-140 503.4 284 83.5
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.1e-140 503.4 279 84.2
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.9e-140 502.7 280 81.4
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 7.2e-140 500.7 284 81.3
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 9.4e-140 500.4 285 80.7
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 1.6e-139 499.6 285 81.4
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.1e-139 499.2 302 78.1
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 3.6e-139 498.4 285 80.4
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 3.6e-139 498.4 285 80.4
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 4.7e-139 498.0 286 81.1
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 4.7e-139 498.0 280 82.1
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 4.7e-139 498.0 285 80.4
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 6.1e-139 497.7 285 80.4
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 6.1e-139 497.7 285 80.7
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 6.1e-139 497.7 286 81.1
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.4e-138 496.5 280 81.8
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.8e-138 496.1 285 80.4
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 1.8e-138 496.1 271 83.0
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 5.2e-138 494.6 298 78.2
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 6.7e-138 494.2 286 81.8
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 8.8e-138 493.8 286 81.8
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 2.0e-137 492.7 286 81.8
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 2.0e-137 492.7 286 81.8
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 3.3e-137 491.9 279 79.9
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 4.4e-137 491.5 285 80.0
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.3e-136 490.0 282 82.3
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.3e-136 490.0 278 83.5
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 2.8e-136 488.8 281 78.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 6.3e-136 487.6 284 78.9
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 9.1e-135 483.8 329 69.9
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.0e-133 480.3 284 79.9
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 2.3e-130 469.2 279 77.4
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 5.7e-129 464.5 275 77.1
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 7.7e-126 454.1 276 73.6
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 1.0e-125 453.8 287 78.4
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.3e-125 453.4 275 78.5
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 1.7e-125 453.0 247 83.8
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 2.2e-125 452.6 284 74.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 2.0e-121 439.5 282 70.9
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 3.4e-121 438.7 236 86.0
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 2.0e-118 429.5 234 83.8
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 8.3e-112 407.5 280 68.2
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 2.0e-110 402.9 225 84.4
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 5.9e-110 401.4 278 68.7
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 5.0e-109 398.3 277 68.6
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 8.6e-101 370.9 196 86.2
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 3.1e-98 362.5 219 74.9
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 9.2e-95 350.9 282 58.9
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.0e-94 348.2 289 61.6
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 6.4e-88 328.2 273 61.2
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 7.6e-81 304.7 171 84.8
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 1.3e-80 303.9 167 85.6
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 4.3e-76 288.9 309 47.6
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.1e-66 257.7 273 48.0
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 2.2e-64 250.0 285 47.4
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 2.7e-62 243.0 278 48.2
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 3.7e-59 232.6 229 50.2
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 2.1e-51 206.8 114 83.3
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 8.7e-45 184.9 103 80.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 5.7e-20 102.4 78 61.5
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 2.1e-14 84.0 78 52.6
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 4.7e-14 82.8 69 59.4
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 5.7e-12 75.9 56 60.7
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 3.6e-06 56.6 39 71.8


User provided reference genes

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