Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 4.8e-126 454.5 230 100.0
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 4.7e-81 305.1 167 92.2
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 5.9e-76 288.1 170 87.1
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 2.6e-63 246.1 170 74.1
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 4.4e-63 245.4 170 73.5
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 1.1e-61 240.7 170 71.8
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 1.3e-51 207.2 138 75.4
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 8.6e-43 177.9 174 50.0
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 2.1e-41 173.3 166 52.4
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 3.6e-41 172.6 166 51.2
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 4.7e-41 172.2 166 51.2
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 1.8e-40 170.2 173 49.1
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 2.3e-40 169.9 171 52.0
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 3.1e-40 169.5 166 53.6
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 1.7e-38 163.7 169 53.8
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 1.4e-37 160.6 165 50.9
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 2.4e-37 159.8 144 56.2
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 4.1e-37 159.1 166 51.2
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.2e-36 157.5 168 45.8
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 4.6e-36 155.6 168 45.8
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 7.8e-36 154.8 162 51.2
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 1.7e-35 153.7 162 50.6
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 3.9e-35 152.5 173 45.7
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 1.1e-34 151.0 167 47.9
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 1.5e-34 150.6 167 48.5
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 3.3e-34 149.4 162 49.4
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 1.2e-33 147.5 173 45.7
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 1.2e-33 147.5 158 49.4
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 2.1e-33 146.7 166 47.0
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 2.1e-33 146.7 163 47.9
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 6.2e-33 145.2 162 50.0
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 6.2e-33 145.2 168 45.8
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 1.1e-32 144.4 171 48.5
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 1.4e-32 144.1 173 44.5
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 1.8e-32 143.7 172 45.3
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 2.4e-32 143.3 167 48.5
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 3.1e-32 142.9 200 43.0
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 8.9e-32 141.4 171 45.6
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 1.2e-31 141.0 163 46.6
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 1.2e-31 141.0 171 45.6
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 2.0e-31 140.2 182 44.0
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 3.4e-31 139.4 144 52.8
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 3.4e-31 139.4 185 44.9
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 5.8e-31 138.7 157 46.5
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 5.8e-31 138.7 161 46.6
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 6.4e-30 135.2 166 45.8
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 1.4e-29 134.0 161 44.7
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 1.4e-29 134.0 171 46.2
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 1.9e-29 133.7 142 52.1
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 2.4e-29 133.3 166 44.0
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 2.4e-29 133.3 166 43.4
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 3.2e-29 132.9 168 44.6
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 3.2e-29 132.9 167 45.5
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 4.2e-29 132.5 161 42.9
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 2.1e-28 130.2 158 45.6
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 3.5e-28 129.4 182 44.0
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 3.5e-28 129.4 131 47.3
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 3.5e-28 129.4 157 45.2
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 4.6e-28 129.0 163 42.3
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 7.8e-28 128.3 157 43.9
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 7.8e-28 128.3 161 44.1
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 1.3e-27 127.5 169 43.8
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 1.7e-27 127.1 170 42.9
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 2.3e-27 126.7 172 44.8
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 2.3e-27 126.7 161 41.6
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 3.0e-27 126.3 112 56.2
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 3.0e-27 126.3 168 42.3
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 3.9e-27 125.9 174 46.0
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 5.1e-27 125.6 161 44.1
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 1.5e-26 124.0 182 41.8
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 1.5e-26 124.0 181 40.3
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 5.6e-26 122.1 182 40.1
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 5.6e-26 122.1 180 42.2
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 7.3e-26 121.7 169 39.6
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 9.6e-26 121.3 179 39.7
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 1.3e-25 120.9 168 40.5
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 1.3e-25 120.9 180 42.2
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 1.3e-25 120.9 180 42.2
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 1.3e-25 120.9 169 39.6
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 1.6e-25 120.6 168 41.1
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 2.1e-25 120.2 168 42.9
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 2.8e-25 119.8 168 42.3
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 8.1e-25 118.2 169 41.4
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 8.1e-25 118.2 160 41.9
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 1.8e-24 117.1 98 58.2
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 1.8e-24 117.1 138 46.4
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.4e-24 116.7 129 46.5
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 3.1e-24 116.3 179 39.1
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 5.3e-24 115.5 158 40.5
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 9.0e-24 114.8 110 51.8
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 1.2e-23 114.4 167 41.9
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 4.4e-23 112.5 180 37.8
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 1.3e-22 110.9 173 39.3
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 2.2e-22 110.2 193 35.2
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 5.1e-19 99.0 152 39.5
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 1.4e-16 90.9 179 33.0
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 5.8e-15 85.5 96 47.9
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 2.9e-14 83.2 105 41.9
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 6.4e-14 82.0 221 28.5
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 7.1e-13 78.6 160 35.6
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 3.9e-11 72.8 166 31.3
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 5.1e-11 72.4 74 52.7
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 1.5e-10 70.9 127 37.8
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 7.4e-10 68.6 129 37.2
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 7.4e-10 68.6 129 37.2
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 7.4e-10 68.6 129 37.2
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 1.8e-08 63.9 81 44.4


User provided reference genes

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