Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.5e-89 332.0 162 100.0
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 6.5e-53 211.1 131 76.3
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 7.2e-52 207.6 128 77.3
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 4.6e-51 204.9 128 74.2
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.1e-47 193.7 128 71.9
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.2e-36 155.6 115 64.3
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 9.4e-36 154.1 113 65.5
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 9.4e-36 154.1 113 65.5
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.6e-35 153.3 115 62.6
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 3.6e-35 152.1 115 63.5
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 4.7e-35 151.8 115 62.6
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 6.1e-35 151.4 115 63.5
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.2e-22 110.5 131 42.7
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.7e-21 106.7 122 47.5
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 5.0e-21 105.1 111 45.0
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 5.0e-21 105.1 122 47.5
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 6.5e-21 104.8 114 44.7
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.5e-20 103.6 111 45.9
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.9e-20 103.2 115 46.1
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.9e-20 103.2 110 47.3
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.5e-20 102.8 155 41.3
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 3.2e-20 102.4 113 43.4
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 3.2e-20 102.4 111 44.1
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 4.2e-20 102.1 113 47.8
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.5e-20 101.7 111 43.2
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 7.2e-20 101.3 124 42.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 7.2e-20 101.3 113 46.9
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 7.2e-20 101.3 122 45.9
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 9.4e-20 100.9 113 46.0
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 1.2e-19 100.5 139 40.3
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 1.2e-19 100.5 113 41.6
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 1.6e-19 100.1 123 41.5
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-19 100.1 125 41.6
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 2.1e-19 99.8 113 45.1
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 2.1e-19 99.8 113 44.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 2.1e-19 99.8 113 45.1
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.7e-19 99.4 111 42.3
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 3.6e-19 99.0 127 39.4
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 4.7e-19 98.6 113 45.1
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 4.7e-19 98.6 112 42.9
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 4.7e-19 98.6 125 41.6
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 6.1e-19 98.2 116 44.8
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 8.0e-19 97.8 112 42.0
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.0e-19 97.8 111 44.1
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.4e-18 97.1 120 42.5
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 1.4e-18 97.1 114 43.0
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 1.4e-18 97.1 125 42.4
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.8e-18 96.7 111 44.1
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.8e-18 96.7 111 44.1
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 1.8e-18 96.7 125 41.6
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.8e-18 96.7 113 45.1
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-18 96.7 111 41.4
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 2.3e-18 96.3 111 44.1
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 6.8e-18 94.7 145 39.3
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 6.8e-18 94.7 111 41.4
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 8.8e-18 94.4 111 41.4
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 8.8e-18 94.4 123 41.5
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 8.8e-18 94.4 113 44.2
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.5e-17 93.6 111 42.3
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 2.0e-17 93.2 122 41.0
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 2.6e-17 92.8 119 39.5
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 4.4e-17 92.0 139 38.1
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 5.7e-17 91.7 113 43.4
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 7.5e-17 91.3 125 40.0
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 7.5e-17 91.3 116 42.2
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 7.5e-17 91.3 121 43.0
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 9.8e-17 90.9 113 40.7
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.3e-16 90.5 112 43.8
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.3e-16 90.5 127 36.2
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.7e-16 90.1 111 40.5
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 6.3e-16 88.2 112 41.1
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 6.3e-16 88.2 114 39.5
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 6.3e-16 88.2 111 41.4
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.1e-15 87.4 113 41.6
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 1.4e-15 87.0 113 41.6
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 1.8e-15 86.7 111 36.9
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.4e-15 86.3 118 39.8
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.4e-15 85.1 112 39.3
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 7.0e-15 84.7 109 43.1
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 2.0e-14 83.2 136 34.6
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 2.7e-14 82.8 115 40.9
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 2.7e-14 82.8 111 40.5
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-14 82.8 111 40.5
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-14 82.8 111 40.5
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-14 82.8 111 40.5
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 5.9e-14 81.6 111 39.6
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 7.7e-14 81.3 111 40.5
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 2.2e-13 79.7 124 38.7
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 2.9e-13 79.3 124 38.7
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 2.9e-13 79.3 120 34.2
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 5.0e-13 78.6 113 34.5
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.9e-12 76.6 110 39.1
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 3.2e-12 75.9 149 32.9
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 3.2e-12 75.9 110 38.2
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 5.5e-12 75.1 110 35.5
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 7.2e-12 74.7 111 36.0
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 9.5e-12 74.3 126 34.9
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 9.5e-12 74.3 109 35.8
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 9.5e-12 74.3 133 34.6
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 9.5e-12 74.3 110 38.2
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-11 73.9 149 32.2
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.6e-11 73.6 121 33.9
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 2.1e-11 73.2 128 33.6
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 2.1e-11 73.2 128 33.6
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.1e-11 73.2 128 33.6
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 2.1e-11 73.2 123 35.0
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.1e-11 73.2 115 36.5
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.7e-11 72.8 108 35.2
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 3.6e-11 72.4 110 37.3
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 3.6e-11 72.4 103 36.9
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.6e-11 72.4 110 36.4
Sabra15G0119600 Salix brachista HOM05D003325 ORTHO05D003852 1.4e-10 70.5 114 34.2
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 1.8e-10 70.1 128 33.6
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.8e-10 70.1 105 38.1
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.8e-10 70.1 114 37.7
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 2.3e-10 69.7 110 36.4
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-10 69.7 133 31.6
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 3.0e-10 69.3 113 34.5
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 3.0e-10 69.3 117 34.2
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 5.2e-10 68.6 101 37.6
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 5.2e-10 68.6 108 34.3
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 5.2e-10 68.6 114 36.0
ATR0561G214 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.2e-09 67.4 109 37.6
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 1.2e-09 67.4 127 35.4
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 1.2e-09 67.4 127 35.4
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.5e-09 67.0 108 32.4
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 2.6e-09 66.2 125 34.4
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 4.4e-09 65.5 126 35.7
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 5.7e-09 65.1 118 34.7
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 7.5e-09 64.7 109 33.9
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 2.2e-08 63.2 126 34.1
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 2.8e-08 62.8 126 34.1
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 3.7e-08 62.4 110 35.5
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 4.9e-08 62.0 125 33.6
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 4.9e-08 62.0 104 31.7
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 6.3e-08 61.6 124 31.5
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.4e-07 59.7 123 30.1
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 3.1e-07 59.3 123 31.7
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 3.1e-07 59.3 116 34.5
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-07 59.3 139 26.6
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-07 59.3 128 28.1
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 3.1e-07 59.3 114 36.0
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 5.4e-07 58.5 106 34.0
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 7.0e-07 58.2 137 29.9
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 9.2e-07 57.8 124 33.1
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 9.2e-07 57.8 121 29.8
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 3.5e-06 55.8 102 32.4


User provided reference genes

Program Settings