Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.6e-45 185.7 87 100.0
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 4.5e-45 184.1 87 98.9
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-42 175.6 87 93.1
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.5e-24 113.6 102 60.8
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 3.7e-23 111.3 88 67.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.6e-16 88.6 83 55.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.7e-15 85.9 83 51.8
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 8.4e-15 83.6 94 46.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 8.4e-15 83.6 86 48.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.1e-14 80.5 72 59.7
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.1e-14 80.5 72 59.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.6e-13 79.3 94 48.9
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 7.8e-13 77.0 87 46.0
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.0e-12 76.6 72 51.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.3e-12 76.3 85 43.5
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.3e-12 75.5 44 68.2
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 3.0e-12 75.1 37 83.8
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.0e-12 75.1 57 61.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 5.1e-12 74.3 37 81.1
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 5.1e-12 74.3 37 81.1
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 5.1e-12 74.3 37 81.1
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.1e-12 74.3 35 85.7
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 5.1e-12 74.3 33 93.9
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 6.6e-12 73.9 35 85.7
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 8.7e-12 73.6 87 44.8
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 8.7e-12 73.6 39 76.9
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 8.7e-12 73.6 37 81.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 8.7e-12 73.6 35 82.9
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.1e-11 73.2 34 88.2
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.1e-11 73.2 41 73.2
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.1e-11 73.2 85 45.9
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-11 72.8 84 45.2
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-11 72.8 37 81.1
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-11 72.8 37 81.1
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-11 72.8 37 81.1
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.5e-11 72.8 37 81.1
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.5e-11 72.8 37 81.1
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.5e-11 72.8 37 81.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-11 72.8 94 41.5
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-11 72.8 49 65.3
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-11 72.8 49 65.3
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.5e-11 72.8 35 82.9
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.9e-11 72.4 35 82.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-11 72.4 35 82.9
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-11 72.4 35 82.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.9e-11 72.4 35 82.9
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-11 72.4 35 82.9
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-11 72.4 35 82.9
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.5e-11 72.0 49 63.3
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.5e-11 72.0 99 37.4
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.5e-11 72.0 35 82.9
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.3e-11 71.6 37 78.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.3e-11 71.6 85 43.5
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 3.3e-11 71.6 35 82.9
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.3e-11 71.6 46 69.6
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.3e-11 71.6 90 42.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.3e-11 71.2 83 44.6
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 4.3e-11 71.2 37 78.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 5.6e-11 70.9 39 79.5
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 5.6e-11 70.9 92 43.5
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 5.6e-11 70.9 41 70.7
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 7.3e-11 70.5 32 90.6
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 7.3e-11 70.5 95 40.0
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 9.6e-11 70.1 33 84.8
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.6e-11 70.1 72 48.6
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.3e-10 69.7 35 77.1
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.3e-10 69.7 45 71.1
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.3e-10 69.7 39 74.4
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.3e-10 69.7 85 43.5
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-10 69.7 39 74.4
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.6e-10 69.3 81 46.9
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 1.6e-10 69.3 96 43.8
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.6e-10 69.3 35 77.1
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.6e-10 69.3 35 77.1
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.6e-10 69.3 35 77.1
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.6e-10 69.3 34 79.4
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.1e-10 68.9 35 82.9
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.1e-10 68.9 32 87.5
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.8e-10 68.6 35 80.0
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.6e-10 68.2 33 81.8
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.6e-10 68.2 92 40.2
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.8e-10 67.8 68 47.1
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.8e-10 67.8 68 47.1
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 4.8e-10 67.8 88 40.9
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 6.2e-10 67.4 44 68.2
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.2e-10 67.4 71 46.5
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.2e-10 67.4 33 84.8
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 6.2e-10 67.4 43 62.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 8.1e-10 67.0 42 71.4
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.1e-10 67.0 38 76.3
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 8.1e-10 67.0 85 44.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 8.1e-10 67.0 32 84.4
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.1e-09 66.6 85 41.2
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.8e-09 65.9 32 81.2
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.8e-09 65.9 34 73.5
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.8e-09 65.9 34 73.5
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.4e-09 65.5 37 73.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.4e-09 65.5 85 38.8
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.4e-09 65.5 35 74.3
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.1e-09 65.1 35 77.1
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.1e-09 65.1 64 48.4
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.1e-09 65.1 64 48.4
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.1e-09 65.1 36 69.4
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 3.1e-09 65.1 80 42.5
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 4.0e-09 64.7 31 83.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 4.0e-09 64.7 37 75.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 4.0e-09 64.7 34 73.5
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.3e-09 64.3 34 73.5
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.3e-09 64.3 45 55.6
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 6.9e-09 63.9 48 62.5
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 6.9e-09 63.9 34 70.6
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 9.0e-09 63.5 30 86.7
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.0e-09 63.5 31 80.6
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.2e-08 63.2 32 81.2
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 1.2e-08 63.2 42 64.3
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.2e-08 63.2 35 80.0
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.2e-08 63.2 86 40.7
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.5e-08 62.8 87 36.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.5e-08 62.8 43 60.5
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.5e-08 62.8 33 75.8
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.0e-08 62.4 31 77.4
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.0e-08 62.4 34 76.5
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.0e-08 62.4 34 67.6
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 2.6e-08 62.0 30 83.3
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 2.6e-08 62.0 30 83.3
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 2.6e-08 62.0 48 60.4
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.6e-08 62.0 34 76.5
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.6e-08 62.0 32 78.1
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.4e-08 61.6 35 68.6
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 3.4e-08 61.6 34 76.5
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 3.4e-08 61.6 42 64.3
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 3.4e-08 61.6 30 83.3
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.4e-08 61.2 35 68.6
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 5.8e-08 60.8 30 80.0
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 5.8e-08 60.8 30 83.3
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 5.8e-08 60.8 34 79.4
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.8e-08 60.8 41 63.4
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 5.8e-08 60.8 30 83.3
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 7.6e-08 60.5 30 80.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 7.6e-08 60.5 30 80.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 7.6e-08 60.5 30 80.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.6e-08 60.5 30 76.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.6e-08 60.5 35 68.6
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.6e-08 60.5 35 74.3
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 7.6e-08 60.5 31 77.4
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 9.9e-08 60.1 30 80.0
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 9.9e-08 60.1 93 36.6
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 9.9e-08 60.1 32 71.9
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.3e-07 59.7 31 74.2
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.3e-07 59.7 29 82.8
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.3e-07 59.7 33 72.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.7e-07 59.3 30 80.0
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.7e-07 59.3 29 82.8
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.2e-07 58.9 30 76.7
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 2.2e-07 58.9 85 36.5
Hma1.2p1_2135F.1_g314830 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.9e-07 57.8 62 45.2
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.9e-07 57.8 35 74.3
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.9e-07 57.8 85 36.5
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.9e-07 57.8 87 36.8
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 8.4e-07 57.0 30 76.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.4e-07 57.0 30 76.7
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 8.4e-07 57.0 85 36.5
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 8.4e-07 57.0 41 56.1
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-06 56.6 32 71.9
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 1.1e-06 56.6 45 57.8
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.4e-06 56.2 43 58.1
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.4e-06 56.2 82 34.1
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 1.4e-06 56.2 82 34.1
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 1.9e-06 55.8 30 73.3
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 1.9e-06 55.8 43 65.1
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.2e-06 55.1 84 35.7
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 3.2e-06 55.1 33 66.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 62.9
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 4.2e-06 54.7 30 70.0
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 7.1e-06 53.9 42 50.0
Hma1.2p1_0629F.1_g192090 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.1e-06 53.9 62 43.5
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 9.3e-06 53.5 30 66.7
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 9.3e-06 53.5 30 66.7


User provided reference genes

Program Settings