Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.4e-101 372.9 304 100.0
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 8.6e-83 311.2 315 89.8
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.7e-81 305.4 318 88.7
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.4e-54 214.9 331 66.8
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.3e-53 211.5 327 66.7
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 2.7e-44 183.3 311 60.5
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.3e-42 176.0 285 66.7
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-41 174.5 285 66.7
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.6e-41 174.1 278 62.9
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-41 174.1 285 66.7
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.1e-41 173.7 307 60.3
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 3.7e-41 172.9 307 59.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 5.3e-40 169.1 321 68.5
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 6.9e-40 168.7 308 56.8
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 9.0e-40 168.3 308 56.8
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.2e-39 167.9 286 61.2
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.2e-39 167.9 275 61.8
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.0e-39 167.2 311 57.9
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 7.6e-39 165.2 309 57.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 7.6e-39 165.2 278 66.5
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.6e-39 165.2 278 66.5
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.3e-38 164.5 308 59.4
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 2.9e-38 163.3 309 58.6
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.5e-37 160.2 279 60.9
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 5.5e-37 159.1 275 61.5
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 7.2e-37 158.7 275 52.0
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 7.2e-37 158.7 278 62.6
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.2e-36 157.9 296 59.8
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.2e-36 157.9 312 50.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 4.6e-36 156.0 317 56.2
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 4.6e-36 156.0 280 61.8
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.3e-35 153.7 275 56.7
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.3e-35 153.7 192 50.5
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.3e-35 153.7 258 64.7
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.0e-35 153.3 287 59.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.0e-35 153.3 289 60.9
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.9e-35 152.9 302 58.9
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 8.7e-35 151.8 281 60.1
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.5e-34 150.2 281 59.1
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.5e-34 150.2 312 55.4
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.3e-34 149.4 270 61.1
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.7e-34 148.3 272 58.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.6e-33 147.5 273 64.1
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.8e-33 146.7 280 58.9
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.8e-33 146.7 196 49.0
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.7e-33 146.4 285 58.2
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 4.8e-33 146.0 280 59.3
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 6.3e-33 145.6 283 59.7
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 6.9e-32 142.1 277 61.7
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 9.0e-32 141.7 278 59.7
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 9.0e-32 141.7 198 49.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.2e-31 141.4 274 59.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.5e-31 141.0 315 54.0
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.5e-31 139.4 274 59.5
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 7.7e-31 138.7 274 59.5
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 7.7e-31 138.7 274 59.5
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.0e-30 138.3 276 58.0
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.9e-30 136.7 289 55.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.8e-30 136.3 308 55.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 5.0e-30 136.0 290 58.6
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 5.0e-30 136.0 195 51.8
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.1e-29 134.8 279 58.1
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.4e-29 134.4 248 63.7
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.9e-29 134.0 282 57.1
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.5e-29 133.7 279 57.7
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.5e-29 133.7 283 59.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 4.2e-29 132.9 320 56.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.2e-29 132.9 271 37.6
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 5.5e-29 132.5 275 57.1
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 7.2e-29 132.1 200 47.0
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 7.2e-29 132.1 281 56.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.2e-28 131.3 279 60.2
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 2.7e-28 130.2 280 55.7
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.6e-28 129.4 276 57.6
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 7.9e-28 128.6 318 52.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.9e-28 128.6 275 59.6
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.0e-27 128.3 311 36.7
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.8e-27 127.5 275 60.0
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.8e-27 127.5 283 55.1
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.3e-27 127.1 281 57.7
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.3e-27 127.1 286 54.9
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.0e-27 126.7 281 56.9
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 5.1e-27 125.9 309 55.7
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 5.1e-27 125.9 284 46.1
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 6.7e-27 125.6 237 44.3
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 8.8e-27 125.2 201 45.3
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.1e-26 124.8 311 51.8
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 2.0e-26 124.0 277 59.2
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 3.3e-26 123.2 307 45.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 6.3e-25 119.0 278 54.7
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 6.3e-25 119.0 277 54.5
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.8e-24 117.5 274 60.6
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.8e-24 117.5 289 53.6
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.4e-24 117.1 276 55.1
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.3e-24 115.9 278 55.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 6.9e-24 115.5 283 58.0
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-23 114.8 290 52.8
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.0e-23 114.0 273 52.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.0e-23 114.0 226 42.5
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.5e-23 112.8 189 43.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 5.9e-23 112.5 211 43.1
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.0e-22 111.7 294 51.7
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.3e-22 111.3 286 55.6
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.9e-22 110.2 281 53.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.8e-22 109.8 273 51.6
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.1e-21 108.2 284 52.8
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.9e-21 107.5 274 44.2
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.9e-21 107.5 274 44.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.9e-21 107.5 283 53.0
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.5e-21 107.1 298 52.7
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.5e-21 107.1 223 42.2
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 4.2e-21 106.3 274 51.5
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 4.2e-21 106.3 274 51.5
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.1e-20 104.0 281 53.4
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.6e-20 103.2 284 43.0
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.7e-20 102.8 176 44.3
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 7.9e-20 102.1 283 53.4
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.0e-19 101.7 273 53.1
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.8e-19 100.9 198 41.9
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 3.9e-19 99.8 282 54.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 8.8e-19 98.6 273 51.3
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.5e-18 97.8 296 51.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 2.0e-18 97.4 274 54.7
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.3e-18 96.7 294 51.7
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.4e-18 96.3 327 35.2
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.4e-18 95.5 269 53.5
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 7.4e-18 95.5 277 51.3
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.4e-18 95.5 232 57.8
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.4e-18 95.5 269 49.8
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 9.7e-18 95.1 268 50.7
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.8e-17 92.8 281 50.9
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 4.8e-17 92.8 199 41.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 6.3e-17 92.4 276 51.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 6.3e-17 92.4 301 52.2
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 3.1e-16 90.1 279 52.7
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 5.3e-16 89.4 279 51.3
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 7.0e-16 89.0 139 48.9
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 9.1e-16 88.6 279 49.5
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 9.1e-16 88.6 279 49.5
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 9.1e-16 88.6 279 49.5
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 2.6e-15 87.0 283 49.5
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 2.6e-15 87.0 291 52.6
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.5e-15 86.3 269 50.9
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 5.9e-15 85.9 286 49.0
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 7.7e-15 85.5 281 53.0
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.0e-14 85.1 131 80.9
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.0e-14 85.1 288 49.3
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.7e-14 84.3 306 36.9
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.2e-14 84.0 277 50.9
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.9e-14 83.6 139 51.1
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.8e-14 83.2 198 38.4
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.5e-14 82.4 281 50.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.5e-13 81.3 189 35.4
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.5e-13 81.3 272 40.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 5.5e-13 79.3 286 53.8
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 9.4e-13 78.6 263 54.4
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.2e-12 78.2 278 46.8
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 4.7e-12 76.3 134 43.3
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 8.0e-12 75.5 139 48.9
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 5.7e-10 69.3 273 44.7
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.2e-09 67.4 275 34.2
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.8e-08 64.3 71 54.9
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.8e-08 64.3 78 50.0
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 3.1e-08 63.5 141 70.2
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.7e-07 60.5 38 81.6
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.9e-07 59.3 69 50.7
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.0e-06 58.5 228 35.5


User provided reference genes

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