Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.7e-230 801.2 406 100.0
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-225 786.2 406 98.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.6e-196 689.5 408 87.0
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 4.5e-196 688.0 408 87.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 6.1e-193 677.6 410 86.3
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.2e-192 674.5 410 85.9
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 9.1e-189 663.7 409 85.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.1e-185 652.5 409 84.1
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.7e-182 641.7 406 81.0
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.9e-180 634.4 406 79.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 7.0e-165 584.3 356 81.5
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 2.0e-135 486.5 425 61.2
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 9.9e-135 484.2 418 60.8
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 4.9e-134 481.9 420 59.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 6.0e-132 474.9 425 60.0
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.0e-131 472.6 424 59.9
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 4.5e-127 458.8 414 56.3
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.4e-125 453.8 423 54.6
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 6.0e-124 448.4 425 55.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 2.3e-123 446.4 372 61.8
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 9.6e-122 441.0 418 55.3
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.1e-120 437.6 407 55.8
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.4e-119 432.6 426 54.2
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 2.2e-118 429.9 410 55.1
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 7.1e-117 424.9 424 53.5
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.5e-116 422.5 429 54.1
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 7.9e-116 421.4 388 57.2
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.0e-115 419.5 408 53.4
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.3e-114 416.0 418 52.4
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.2e-113 413.3 422 53.6
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.7e-113 412.5 410 52.0
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 3.1e-112 409.5 430 52.6
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 4.5e-111 405.6 421 51.3
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.9e-109 400.2 429 50.3
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 7.2e-109 398.3 437 49.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.6e-108 396.0 426 50.9
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.7e-105 387.1 422 49.8
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 3.7e-105 386.0 422 50.0
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.4e-104 384.0 411 50.1
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.8e-104 383.6 352 57.1
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.4e-104 383.3 437 49.0
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 9.1e-104 381.3 436 49.8
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 9.1e-104 381.3 390 51.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 4.5e-103 379.0 417 50.6
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.0e-102 377.9 421 49.6
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 6.5e-102 375.2 417 47.7
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.5e-102 375.2 415 48.4
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-100 370.5 400 50.2
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 6.1e-100 368.6 388 51.3
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 6.1e-100 368.6 417 49.2
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.9e-100 368.2 418 46.4
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.0e-99 367.9 421 47.0
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.4e-99 367.5 456 45.0
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.8e-99 367.1 419 48.4
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.8e-99 367.1 391 50.1
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.3e-99 366.7 421 46.8
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 2.3e-99 366.7 414 47.8
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 5.1e-99 365.5 425 46.6
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 5.1e-99 365.5 421 48.2
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 6.7e-99 365.2 415 49.9
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 8.8e-99 364.8 421 45.4
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-98 364.4 418 46.7
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.7e-97 359.4 415 47.0
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.7e-97 359.4 415 47.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.4e-96 356.7 415 46.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 5.3e-96 355.5 416 47.8
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.2e-95 354.4 415 45.8
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.5e-95 354.0 427 45.7
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.6e-95 353.2 420 46.7
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 7.7e-95 351.7 416 48.3
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 7.7e-95 351.7 417 46.5
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 6.5e-94 348.6 403 48.9
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 3.2e-93 346.3 418 46.7
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 5.5e-93 345.5 375 48.3
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 9.4e-93 344.7 420 46.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 3.6e-92 342.8 417 46.8
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.6e-92 342.8 410 46.6
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 8.0e-92 341.7 418 47.6
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.0e-91 341.3 421 48.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-91 340.5 426 46.7
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.8e-91 340.5 419 46.1
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.3e-91 340.1 407 47.9
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.0e-91 339.7 421 48.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 5.7e-90 335.5 420 45.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.2e-89 333.6 426 45.3
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-89 333.6 415 43.9
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.2e-89 333.6 408 46.3
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.7e-89 332.8 413 45.5
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 4.8e-89 332.4 426 45.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 4.8e-89 332.4 422 45.3
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 6.3e-89 332.0 417 45.1
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.1e-88 331.3 426 45.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 5.3e-88 328.9 458 42.6
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 7.0e-88 328.6 454 42.7
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.2e-87 327.8 382 46.6
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 1.6e-87 327.4 423 45.9
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.9e-86 323.2 408 43.9
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 4.2e-85 319.3 421 43.7
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 4.2e-85 319.3 360 49.4
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.2e-81 307.0 421 45.6
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.1e-80 304.7 418 42.8
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.4e-80 304.3 330 48.2
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 2.9e-78 296.6 396 45.2
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 3.8e-78 296.2 403 42.4
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 9.4e-77 291.6 418 43.5
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.2e-73 280.4 408 40.2
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 6.6e-70 268.9 356 46.1
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 3.7e-65 253.1 144 86.1
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.7e-63 246.9 419 37.9
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.6e-62 242.3 419 37.0
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 7.3e-61 238.8 418 36.6
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.0e-59 235.0 329 46.5
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.6e-58 230.3 205 58.5
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 9.8e-58 228.4 265 49.8
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.9e-56 224.2 369 34.7
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 6.0e-55 219.2 350 35.7
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.5e-50 204.5 205 48.8
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.4e-48 197.2 379 35.1
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 4.0e-43 179.9 327 34.9
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 3.4e-42 176.8 179 43.6
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.1e-40 171.8 428 28.7
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 5.1e-38 162.9 153 56.2
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.5e-37 161.4 431 31.3
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 7.3e-37 159.1 431 28.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.8e-35 154.5 420 29.0
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.0e-35 153.3 460 26.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.3e-33 148.3 435 29.9
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.4e-32 144.1 391 27.9
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.1e-29 135.2 503 24.1
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.4e-27 127.5 343 28.6
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 8.7e-22 109.0 195 34.9
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.3e-19 99.8 233 30.9
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-18 96.3 315 29.5
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-14 84.7 76 52.6
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 3.9e-14 83.6 86 48.8
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.1e-11 75.5 54 57.4
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 1.2e-10 72.0 91 46.2
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.8e-10 69.7 237 26.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.2e-08 63.5 59 54.2
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 5.5e-08 63.2 62 48.4


User provided reference genes

Program Settings