Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.2e-234 814.7 410 100.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 3.4e-223 778.1 410 95.9
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.6e-196 688.0 411 85.9
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-195 686.4 411 85.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.3e-194 680.6 412 85.7
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 9.5e-194 680.2 412 85.7
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.5e-191 672.9 410 85.9
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 2.6e-191 672.2 410 85.6
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.0e-171 607.1 410 77.3
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 7.3e-170 600.9 410 76.3
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 3.0e-155 552.4 357 78.2
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.5e-135 486.9 419 60.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 8.5e-134 481.1 414 59.7
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.9e-133 479.9 418 60.0
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 5.3e-128 461.8 418 58.4
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 2.6e-127 459.5 419 58.2
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 3.6e-124 449.1 414 55.6
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 3.7e-121 439.1 419 54.7
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 5.3e-120 435.3 408 54.7
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.6e-119 433.7 423 53.2
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 7.7e-119 431.4 372 60.2
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.8e-118 429.1 429 53.6
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.4e-115 420.6 387 56.8
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 2.3e-115 419.9 426 52.8
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.3e-115 419.9 422 54.0
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 4.0e-115 419.1 422 53.6
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 4.4e-114 415.6 413 53.0
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.8e-113 412.9 418 51.9
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.9e-110 402.9 427 51.3
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.1e-109 401.0 409 51.1
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 3.6e-108 396.0 421 50.6
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.8e-107 393.7 411 50.4
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.0e-107 392.9 419 50.1
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.2e-106 391.0 423 49.4
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 7.5e-106 388.3 437 48.7
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.0e-102 377.9 419 48.9
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 5.0e-102 375.6 352 56.8
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.5e-101 374.0 419 47.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 4.2e-101 372.5 410 50.0
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 4.2e-101 372.5 428 48.6
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 7.2e-101 371.7 422 48.3
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 8.0e-100 368.2 413 48.4
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.8e-99 367.1 387 50.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.8e-99 367.1 421 45.4
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.5e-98 364.0 421 47.5
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.0e-98 363.6 417 48.4
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.3e-97 360.9 412 47.8
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.2e-97 360.1 415 46.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.7e-97 359.4 419 46.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.9e-97 359.0 419 48.0
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.9e-97 359.0 418 46.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.3e-97 358.2 424 46.5
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 8.3e-97 358.2 419 48.9
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.1e-96 357.8 437 48.1
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.8e-96 357.1 424 46.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.4e-96 356.7 425 44.9
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.2e-95 354.4 390 47.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 3.5e-95 352.8 438 46.8
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 7.8e-95 351.7 375 48.0
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-94 350.5 421 45.1
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 6.6e-94 348.6 418 47.6
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.1e-93 347.8 420 45.5
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-93 347.4 421 46.3
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.5e-93 347.4 458 43.0
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.9e-93 347.1 420 46.4
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-93 346.3 395 48.4
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.1e-92 343.6 424 46.0
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.8e-92 343.2 418 45.0
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 4.7e-92 342.4 418 45.5
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 6.2e-92 342.0 429 44.3
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 6.8e-91 338.6 413 46.0
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 2.6e-90 336.7 422 45.7
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 7.5e-90 335.1 417 45.6
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 7.5e-90 335.1 417 45.6
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 9.8e-90 334.7 420 44.3
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 9.8e-90 334.7 422 45.0
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.9e-89 333.2 426 44.8
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.7e-89 332.8 421 44.4
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 8.3e-89 331.6 416 46.6
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 8.3e-89 331.6 416 46.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 8.3e-89 331.6 424 44.6
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.4e-88 330.9 420 45.2
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 4.1e-88 329.3 408 47.8
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 7.0e-88 328.6 426 45.3
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 7.0e-88 328.6 424 44.3
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.2e-87 327.8 427 44.3
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.6e-87 327.4 411 45.5
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.0e-86 324.7 417 43.6
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.3e-86 323.6 423 43.7
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 3.0e-86 323.2 421 43.7
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 3.0e-86 323.2 406 47.5
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-85 320.1 418 43.1
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 5.6e-85 318.9 384 45.6
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-84 317.4 427 44.7
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.1e-84 317.0 458 41.7
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 3.6e-84 316.2 455 42.4
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 5.2e-83 312.4 412 41.7
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.5e-82 310.8 420 42.4
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 8.3e-81 305.1 418 42.8
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 8.3e-81 305.1 330 47.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 4.1e-80 302.8 363 47.7
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.5e-79 299.7 416 44.0
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 5.6e-77 292.4 394 43.4
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.3e-75 287.0 419 43.0
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.6e-74 283.5 407 40.5
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 3.0e-70 270.0 404 40.3
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 6.8e-67 258.8 354 44.6
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 7.3e-61 238.8 144 81.9
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.2e-60 235.7 420 36.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.5e-58 231.1 418 36.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.6e-58 230.3 420 35.2
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.7e-57 227.6 372 34.7
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 6.4e-57 225.7 327 45.3
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.1e-55 220.7 206 56.8
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.3e-52 211.5 347 35.7
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.1e-52 210.7 267 48.7
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 1.1e-48 198.4 379 34.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 3.5e-47 193.4 206 47.1
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 9.0e-43 178.7 327 34.6
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 2.9e-41 173.7 179 42.5
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.2e-40 170.2 417 27.6
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 9.6e-37 158.7 430 26.5
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.1e-36 157.5 152 53.9
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 8.2e-36 155.6 390 28.7
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.0e-34 151.0 432 26.4
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.5e-34 149.8 435 28.7
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.9e-32 144.4 429 29.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 5.1e-30 136.3 441 26.5
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 4.3e-29 133.3 523 24.3
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 7.4e-29 132.5 410 27.3
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.3e-20 102.8 194 33.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.9e-16 91.3 220 29.1
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-15 86.3 208 32.7
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-14 85.1 76 51.3
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 6.7e-14 82.8 86 47.7
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.3e-12 78.6 54 59.3
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-09 67.8 238 25.2
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 1.1e-08 65.5 91 42.9
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.0e-06 57.4 58 50.0
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 8.8e-06 55.8 47 51.1


User provided reference genes

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