Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.6e-104 382.1 195 100.0
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.6e-104 382.1 195 100.0
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 9.7e-104 380.2 193 100.0
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.7e-103 379.4 195 99.0
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 96.4
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.8
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 94.4
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 94.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 94.4
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 94.4
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 94.4
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 9.4e-99 363.6 195 93.8
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 93.3
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 93.8
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.8
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.3
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.8
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.8
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 93.8
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 93.8
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.6e-98 361.7 195 92.8
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 4.7e-98 361.3 195 93.3
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.8
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 93.3
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 7.9e-98 360.5 195 92.8
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 92.3
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 93.3
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 92.8
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 91.3
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 90.8
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 92.3
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 92.8
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.8e-97 359.4 191 92.7
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 91.8
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 92.3
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 2.3e-97 359.0 195 92.3
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 2.3e-97 359.0 193 92.2
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 3.0e-97 358.6 194 91.8
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 3.0e-97 358.6 194 91.8
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 92.3
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 3.0e-97 358.6 194 91.8
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 3.9e-97 358.2 195 91.8
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 3.9e-97 358.2 195 92.8
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 5.2e-97 357.8 194 91.2
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 5.2e-97 357.8 186 96.2
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 5.2e-97 357.8 195 92.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 6.7e-97 357.5 194 91.2
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 6.7e-97 357.5 194 91.2
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 6.7e-97 357.5 194 91.2
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 6.7e-97 357.5 193 92.2
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 6.7e-97 357.5 195 92.3
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 8.8e-97 357.1 194 91.8
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 91.8
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 91.8
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 91.8
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 91.8
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 91.8
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 1.1e-96 356.7 195 91.8
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 91.8
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 91.3
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 2.0e-96 355.9 195 90.8
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 2.0e-96 355.9 195 90.8
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.0e-96 355.9 195 90.8
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.3e-96 355.1 189 93.1
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 3.3e-96 355.1 195 90.3
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 3.3e-96 355.1 195 90.8
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 4.4e-96 354.8 199 91.0
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 4.4e-96 354.8 195 91.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 5.7e-96 354.4 187 94.7
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 9.7e-96 353.6 195 90.8
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.3e-95 353.2 189 93.1
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.3e-95 353.2 195 90.3
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.3e-95 353.2 195 90.8
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 1.7e-95 352.8 195 90.8
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.7e-95 352.8 195 90.8
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.7e-95 352.8 195 89.2
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 2.8e-95 352.1 195 89.7
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 2.8e-95 352.1 195 90.3
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 2.8e-95 352.1 186 93.5
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 3.7e-95 351.7 186 94.1
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.7e-95 351.7 195 89.7
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 3.7e-95 351.7 195 90.3
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 6.3e-95 350.9 187 93.0
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.1e-94 350.1 193 90.2
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 94.1
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-94 349.4 195 89.7
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.8e-94 349.4 188 92.6
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.8e-94 349.4 188 92.0
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.4e-94 349.0 185 94.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 4.1e-94 348.2 186 92.5
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 4.1e-94 348.2 194 91.2
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 5.3e-94 347.8 185 93.0
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 5.3e-94 347.8 189 91.5
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 9.1e-94 347.1 185 91.9
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.2e-93 346.7 185 92.4
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-93 346.7 185 92.4
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-93 346.7 185 92.4
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.2e-93 346.7 186 92.5
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.6e-93 346.3 195 88.2
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 3.5e-93 345.1 185 92.4
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 3.5e-93 345.1 185 92.4
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.0e-92 343.6 186 90.9
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.3e-92 343.2 195 87.2
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 6.5e-92 340.9 195 90.8
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 8.5e-92 340.5 218 80.7
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.6e-90 336.3 195 87.7
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 2.7e-90 335.5 195 89.2
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 6.1e-90 334.3 216 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 1.4e-89 333.2 195 85.1
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 2.6e-88 328.9 195 85.1
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.3e-88 328.6 226 76.1
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 4.5e-85 318.2 193 80.3
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.0e-84 317.0 176 89.8
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.7e-84 316.2 195 79.5
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.1e-83 313.5 195 83.6
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.1e-78 297.0 195 81.0
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 1.2e-77 293.5 193 79.8
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 5.9e-77 291.2 195 79.0
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 7.7e-77 290.8 195 79.0
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 7.7e-77 290.8 195 77.9
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 1.1e-75 287.0 166 86.1
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.5e-75 286.6 186 81.2
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.5e-75 286.6 186 81.2
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 9.5e-75 283.9 186 80.6
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 2.8e-74 282.3 150 95.3
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.1e-70 270.4 195 72.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 1.2e-66 256.9 136 92.6
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 5.9e-61 238.0 142 81.7
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 3.9e-60 235.3 180 64.4
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.2e-58 230.3 124 91.9
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.8e-58 229.2 180 67.8
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 4.1e-54 215.3 146 77.4
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.7e-53 212.6 123 87.0
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.7e-53 212.6 128 86.7
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 3.2e-46 189.1 186 59.7
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 5.4e-46 188.3 188 50.5
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 4.3e-43 178.7 173 53.8
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.8e-41 173.3 93 93.5
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.4e-38 162.9 123 72.4
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.2e-38 162.5 83 95.2
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.3e-35 152.5 75 98.7
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.6e-35 151.0 75 97.3
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.0e-32 143.3 79 91.1
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.5e-27 126.3 70 90.0
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 5.6e-27 125.2 70 88.6
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 1.4e-22 110.5 58 91.4
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 7.4e-19 98.2 54 88.9
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.6e-18 97.1 109 55.0
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-17 94.4 109 51.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.8e-15 85.9 47 87.2
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 4.2e-14 82.4 52 73.1
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 1.2e-13 80.9 90 52.2
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 2.3e-12 76.6 41 92.7
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.9e-12 75.9 50 74.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 1.9e-11 73.6 39 92.3
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 1.6e-10 70.5 42 83.3
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 1.6e-10 70.5 42 83.3
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.4e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 9.3e-06 54.7 69 43.5


User provided reference genes

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