Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.2e-191 671.8 385 100.0
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-187 659.4 385 98.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.2e-176 622.5 385 88.3
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.6e-118 429.1 399 66.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.8e-109 398.3 401 61.1
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.4e-108 396.0 399 63.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.2e-107 393.3 399 62.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.7e-105 386.3 402 59.7
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.8e-105 384.8 401 59.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.6e-102 377.1 394 59.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.8e-101 373.6 404 58.2
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 6.6e-88 328.6 398 59.5
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 5.8e-84 315.5 386 55.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 4.9e-83 312.4 410 57.1
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 9.2e-82 308.1 400 51.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.0e-80 303.1 338 55.3
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.6e-80 301.6 400 51.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.1e-79 301.2 395 50.4
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 3.3e-79 299.7 389 51.7
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.6e-79 298.9 343 56.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 2.4e-77 293.5 397 55.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 3.1e-77 293.1 393 51.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 9.0e-77 291.6 405 52.6
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.6e-76 290.0 407 52.6
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 3.4e-76 289.7 396 49.0
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.4e-76 289.7 395 47.6
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 7.6e-76 288.5 390 53.8
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.9e-74 283.9 333 57.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.4e-74 283.5 403 49.9
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 2.4e-74 283.5 398 49.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 9.3e-74 281.6 399 48.1
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.5e-73 279.6 389 46.3
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.3e-72 277.7 405 47.7
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.3e-72 277.7 403 49.4
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.0e-72 276.6 425 46.8
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.9e-72 276.2 412 48.1
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 8.7e-72 275.0 394 48.0
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 8.7e-72 275.0 415 48.0
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 4.3e-71 272.7 431 45.9
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.8e-70 269.2 385 50.6
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 4.8e-70 269.2 409 46.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 8.1e-70 268.5 403 48.9
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.4e-69 267.7 397 47.6
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.4e-69 266.9 401 46.1
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.1e-69 266.5 390 48.2
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 4.0e-69 266.2 414 48.3
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 6.9e-69 265.4 392 53.8
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 6.9e-69 265.4 409 47.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 9.0e-69 265.0 333 50.2
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 4.5e-68 262.7 406 49.0
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 5.8e-68 262.3 383 52.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 5.8e-68 262.3 389 48.6
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 7.6e-68 261.9 389 48.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 7.6e-68 261.9 392 50.5
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 3.8e-67 259.6 389 46.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.9e-66 257.3 424 44.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.2e-66 256.5 412 50.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 4.2e-66 256.1 398 46.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.6e-65 254.2 406 50.0
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.3e-64 250.4 388 52.3
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.3e-63 246.5 336 51.2
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 5.6e-63 245.7 402 47.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 5.6e-63 245.7 396 47.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.3e-62 244.6 402 47.3
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 8.1e-62 241.9 396 46.0
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.1e-61 241.5 187 70.6
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.4e-61 240.4 346 46.8
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.4e-61 240.4 346 46.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.0e-61 239.6 344 50.6
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.3e-61 239.2 401 46.1
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 6.9e-61 238.8 407 45.2
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 4.5e-60 236.1 379 46.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.6e-60 235.3 346 46.0
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 9.9e-60 235.0 407 44.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.3e-59 234.6 390 52.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.2e-59 233.8 401 45.6
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.4e-58 231.1 420 41.4
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.6e-57 227.6 439 41.2
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.1e-57 227.3 406 44.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.7e-57 226.9 438 41.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.3e-56 224.6 384 43.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.9e-56 223.0 398 43.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.9e-56 223.0 344 46.5
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.5e-55 221.1 378 47.1
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.5e-55 220.3 365 46.6
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 4.3e-55 219.5 385 44.2
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.1e-54 217.2 323 47.4
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.8e-54 216.9 397 47.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 4.8e-54 216.1 396 43.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.2e-54 215.7 394 49.5
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.4e-53 214.5 396 45.7
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.0e-53 213.0 323 47.1
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-53 212.6 357 46.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.3e-53 212.6 331 44.4
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.0e-51 208.4 388 48.5
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 6.7e-48 195.7 330 44.2
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.1e-47 194.9 272 52.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.2e-46 190.7 394 40.1
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.4e-45 187.2 295 50.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.3e-43 181.4 297 43.8
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 5.0e-43 179.5 398 37.9
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 7.2e-42 175.6 312 44.9
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 7.2e-42 175.6 388 44.6
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.3e-40 170.6 403 37.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.3e-40 170.6 392 41.8
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 3.0e-40 170.2 306 44.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 3.0e-40 170.2 395 38.0
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.9e-40 169.9 376 41.2
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 6.7e-40 169.1 386 40.2
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 6.7e-40 169.1 386 40.2
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 6.7e-40 169.1 370 40.5
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.5e-39 167.9 342 42.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.3e-38 164.9 409 35.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.2e-38 164.1 376 39.9
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.8e-38 163.7 358 41.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 6.3e-38 162.5 389 40.1
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.5e-36 157.9 385 39.2
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 6.5e-35 152.5 252 46.4
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 8.5e-35 152.1 188 54.3
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 8.5e-35 152.1 225 47.6
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.1e-33 147.5 432 33.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.4e-32 144.8 325 37.2
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.4e-31 139.8 286 41.3
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.4e-31 139.8 286 41.3
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.3e-30 138.3 182 54.4
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.5e-28 131.3 118 66.9
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.3e-27 128.3 277 37.9
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-27 127.5 125 56.8
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 4.4e-23 113.2 86 67.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 7.0e-21 105.9 396 31.1
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 9.1e-21 105.5 362 31.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-20 104.0 197 44.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-20 104.0 197 44.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 3.5e-20 103.6 221 40.3
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.2e-18 95.9 202 42.6
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-17 94.0 279 32.6
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.1e-13 80.5 200 35.5
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.2e-09 68.6 104 47.1
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-08 64.7 222 29.7
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.8e-08 62.4 197 34.5
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-07 62.0 188 34.6
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-07 61.2 197 34.0
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-07 60.5 197 34.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.5e-07 59.3 197 33.5
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.5e-07 59.3 197 33.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.7e-06 58.2 143 37.8
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 8.3e-06 55.8 46 67.4


User provided reference genes

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