Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 5.2e-59 230.7 106 100.0
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 5.2e-59 230.7 106 100.0
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 3.1e-56 221.5 106 95.3
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 8.6e-30 133.7 101 59.4
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 8.0e-28 127.1 99 55.6
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 1.8e-27 125.9 89 61.8
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 5.2e-27 124.4 87 58.6
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 8.9e-27 123.6 99 54.5
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 1.2e-26 123.2 74 66.2
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 2.0e-26 122.5 93 58.1
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 5.8e-26 120.9 99 56.6
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 7.5e-26 120.6 85 61.2
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 3.7e-25 118.2 99 53.5
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 8.3e-25 117.1 96 47.9
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 1.1e-24 116.7 89 57.3
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 1.9e-24 115.9 74 58.1
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 1.9e-24 115.9 99 52.5
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 2.4e-24 115.5 99 52.5
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 2.4e-24 115.5 86 54.7
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.2e-24 115.2 102 50.0
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 5.4e-24 114.4 90 48.9
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 5.4e-24 114.4 86 51.2
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.2e-23 113.2 98 44.9
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.2e-23 113.2 100 48.0
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 1.2e-23 113.2 96 47.9
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 2.7e-23 112.1 87 50.6
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 6.0e-23 110.9 100 48.0
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 6.0e-23 110.9 72 58.3
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 1.0e-22 110.2 104 46.2
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 1.0e-22 110.2 88 51.1
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 2.3e-22 109.0 87 54.0
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 3.0e-22 108.6 109 43.1
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 6.6e-22 107.5 103 49.5
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 8.6e-22 107.1 87 49.4
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 1.1e-21 106.7 90 51.1
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 1.9e-21 105.9 89 47.2
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 4.3e-21 104.8 108 49.1
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 4.3e-21 104.8 98 46.9
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 7.3e-21 104.0 98 42.9
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 8.1e-20 100.5 84 46.4
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 1.1e-19 100.1 97 48.5
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 1.8e-19 99.4 70 58.6
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 3.1e-19 98.6 90 46.7
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 8.9e-19 97.1 92 44.6
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 8.9e-19 97.1 97 49.5
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 8.9e-19 97.1 92 44.6
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 5.8e-18 94.4 92 43.5
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 1.3e-17 93.2 81 53.1
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 8.3e-17 90.5 66 53.0
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 8.3e-17 90.5 57 64.9
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 2.4e-16 89.0 68 50.0
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 3.2e-16 88.6 83 45.8
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 1.6e-15 86.3 98 42.9
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 2.1e-15 85.9 104 42.3
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 2.1e-15 85.9 88 44.3
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 2.7e-15 85.5 107 41.1
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 2.7e-15 85.5 107 41.1
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 2.7e-15 85.5 107 41.1
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 7.8e-15 84.0 101 41.6
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 7.8e-15 84.0 103 41.7
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 1.0e-14 83.6 100 42.0
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 1.3e-14 83.2 97 42.3
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 2.3e-14 82.4 103 39.8
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 2.3e-14 82.4 107 39.3
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 2.3e-14 82.4 107 39.3
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 5.1e-14 81.3 91 44.0
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 8.6e-14 80.5 106 37.7
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 1.1e-13 80.1 66 50.0
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 1.5e-13 79.7 101 40.6
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 9.5e-13 77.0 102 40.2
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 9.5e-13 77.0 102 40.2
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 9.5e-13 77.0 102 40.2
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 9.5e-13 77.0 102 37.3
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 1.2e-12 76.6 72 45.8
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 8.9e-11 70.5 103 32.0
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 3.4e-10 68.6 106 35.8
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 3.8e-09 65.1 96 34.4
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 3.8e-09 65.1 96 34.4
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 6.4e-09 64.3 96 34.4
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 6.4e-09 64.3 96 34.4


User provided reference genes

Program Settings